hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09384777/chunk_1/iprscan-20080502-09384777.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1679 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00209 373.7 1.1e-107 15 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00209 1/15 110 161 .. 1 66 [] 46.4 3.9e-09 SM00209 2/15 267 327 .. 1 66 [] 39.5 4.6e-07 SM00209 3/15 415 471 .. 1 66 [] 8.4 1.3 SM00209 4/15 532 589 .. 1 66 [] 40.1 3e-07 SM00209 5/15 592 663 .. 1 66 [] 27.4 0.002 SM00209 6/15 668 724 .. 1 66 [] 29.8 0.00038 SM00209 7/15 802 850 .. 1 66 [] 17.9 0.11 SM00209 8/15 856 926 .. 1 66 [] 3.9 4.1 SM00209 9/15 931 988 .. 1 66 [] 43.4 3.1e-08 SM00209 10/15 991 1055 .. 1 66 [] 8.6 1.2 SM00209 11/15 1060 1111 .. 1 66 [] 33.6 2.6e-05 SM00209 12/15 1114 1175 .. 1 66 [] 2.0 6.6 SM00209 13/15 1180 1232 .. 1 66 [] 43.3 3.1e-08 SM00209 14/15 1233 1298 .. 1 66 [] 9.7 0.9 SM00209 15/15 1303 1361 .. 1 66 [] 19.7 0.068 Alignments of top-scoring domains: SM00209: domain 1 of 15, from 110 to 161: score 46.4, E = 3.9e-09 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg +se+ +WS CS + CG ++ ++RtR + +pp +gg KIAA1679 110 VSEFLPWSNCS-KGCG-----KKLQHRTR-----AVIAPP---LFGG 142 epCs...EtrpCntqpnLqpCp<-* +C++ +E+r+C + Cp KIAA1679 143 LQCPnltESRACDAPI---SCP 161 SM00209: domain 2 of 15, from 267 to 327: score 39.5, E = 4.6e-07 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg s+Ws+WSpCS +tC +G+ g+r+R+R v +++ gg KIAA1679 267 TSQWSSWSPCS-KTCRSGSLLPGFRSRSRN---VKHMA-----IGGG 304 epCs...EtrpCntqpn.LqpCp<-* ++C++ E+++C ++ Lq Cp KIAA1679 305 KECPellEKEACIVEGElLQQCP 327 SM00209: domain 3 of 15, from 415 to 471: score 8.4, E = 1.3 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg +s+Ws W+ C + C + + +g+rtR+R+ + + +p+ KIAA1679 415 VSSWSAWGLCIHENCHEPQGKKGFRTRQRH-VLMESTGPA------- 453 epCs...EtrpCntqpnLqpCp<-* ++C++ E+ pC+ + C KIAA1679 454 GHCPhlvESVPCEDP----MCY 471 SM00209: domain 4 of 15, from 532 to 589: score 40.1, E = 3e-07 *->wseWseWSpCSgvtCG....gGgrtegvrtRtRsslrvccspppprn seW+eWS+CS ++C ++++ G +tR+R ++++ ++ KIAA1679 532 LSEWTEWSSCS-QSCSnknsDG-----KQTRSR-----TILALAG-- 565 qnggepCs......EtrpCntqpnLqpCp<-* gg+pC++++ +E r Cn + C KIAA1679 566 -EGGKPCPpsqalqEHRLCNDH----SCM 589 SM00209: domain 5 of 15, from 592 to 663: score 27.4, E = 0.002 *->wseWseWSpCSg................vtCGgGgrtegvrtRtRss ++e+s+W+pCS ++ + + + + ++++tCG G ++tR+ KIAA1679 592 HWETSPWGPCSEdtlvtalnatigwngeATCGVG-----IQTRRV-- 631 lrvccspppprnqnggepCs......EtrpCntqpnLqpCp<-* +c+ + + q+ ++C+++++++ +rpC++ pC KIAA1679 632 --FCVKSHVG--QVMTKRCPdstrpeTVRPCFL-----PCK 663 SM00209: domain 6 of 15, from 668 to 724: score 29.8, E = 0.00038 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg ++++seW+pC + C G + ++R+R + ++ ngg KIAA1679 668 VTAFSEWTPCP-RMCQAG-NATVKQSRYRI----IIQEAA----NGG 704 epCs....EtrpCntqpnLqpCp<-* ++C+++ E r+C+ Cp KIAA1679 705 QECPdtlyEERECEDVS---LCP 724 SM00209: domain 7 of 15, from 802 to 850: score 17.9, E = 0.11 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg ++Ws +pCS C e +++R+R + +++ KIAA1679 802 FTAWSKFTPCS-TNC------EATKSRRR-----QLTGKSRKK---- 832 epCs...EtrpCntqpnLqpCp<-* e C++++ + +t+ Cp KIAA1679 833 EKCQdsdLYPLVETE----LCP 850 SM00209: domain 8 of 15, from 856 to 926: score 3.9, E = 4.1 *->wseWseWSpC..................SgvtCGgGgrtegvrtRtR + + WS+C ++++++++++ + + +S + CG+G r R KIAA1679 856 SQPYGNWSDCilpegrrephrglrvqadS-KECGEG-----LRFRAV 896 sslrvccspppprnqnggepCs....EtrpCntqpnLqpCp<-* +c + +++ ++ + Cs+++ ++ C pCp KIAA1679 897 ----ACSDKNGR--PVDPSFCSssgyIQEKCVI-----PCP 926 SM00209: domain 9 of 15, from 931 to 988: score 43.4, E = 3.1e-08 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg s+Ws+W++CS +CG G vr+R+ + + p ngg KIAA1679 931 LSDWSSWGSCS-SSCGIG-----VRIRSK----WLKEKPY----NGG 963 epCs...........EtrpCntqpnLqpCp<-* +pC++ + +++ + +E pC +C KIAA1679 964 RPCPkldlknqaqvhEAVPCYS-----ECN 988 SM00209: domain 10 of 15, from 991 to 1055: score 8.6, E = 1.2 *->wseWseWSpC.......SgvtCGgGgrtegvrtRtRsslrvccsppp + + WS+C+ +++ +S CGgG +++R+ + c++ + KIAA1679 991 SWVVEHWSSCkinnelrS-LRCGGG-----TQSRKIR----CVNTAD 1027 prnqnggepCs..........EtrpCntqpnLqpCp<-* + gg+ s+ ++++ ++Et+ C++ Cp KIAA1679 1028 G---EGGAVDSnlcnqdeippETQSCSL-----MCP 1055 SM00209: domain 11 of 15, from 1060 to 1111: score 33.6, E = 2.6e-05 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg +seW+ WS C ++C ++t +++RtR + p+ + KIAA1679 1060 MSEWGLWSKCP-QSCD--PHT--MQRRTR-----HLLRPS----LNS 1092 epCs...EtrpCntqpnLqpCp<-* + C ++++++pC ++ ++C KIAA1679 1093 RTCAedsQVQPCLLN---ENCF 1111 SM00209: domain 12 of 15, from 1114 to 1175: score 2.0, E = 6.6 *->wseWseWSpCSg...vtCGgGgrtegvrtRtRsslrvccspppprnq +eWS+C +++++CG G vrtR + vc ++ p KIAA1679 1114 QYNLTEWSTCQLsenAPCGQG-----VRTRLL--SCVCSDGKP---- 1149 nggepCs.........EtrpCntqpnLqpCp<-* + +C++++ +++++++ pC + +C KIAA1679 1150 VSMDQCEqhnlekpqrMSIPCLV-----ECV 1175 SM00209: domain 13 of 15, from 1180 to 1232: score 43.3, E = 3.1e-08 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg s W+ W++CS +tCG+G g+ +RtR + ++p + g KIAA1679 1180 LSGWTAWTECS-QTCGHG----GRMSRTR----FIIMPTQ----GEG 1213 epCs....EtrpCntqpnLqpCp<-* +pC+++ ++ ++C + pC KIAA1679 1214 RPCPteltQEKTCPVT----PCY 1232 SM00209: domain 14 of 15, from 1233 to 1298: score 9.7, E = 0.9 *->wseWseWSpCS...gvtCGgGgrtegvrtRtRsslrvccspppprnq + + WS+C ++g CG+G v++R+ s c + ++ KIAA1679 1233 SWVLGNWSACKlegG-DCGEG-----VQIRSLS----CMVHSGS--I 1267 nggepCs..............EtrpCntqpnLqpCp<-* + ++ ++ + +++ ++ C++ pCp KIAA1679 1268 SHAAGRVedalcgempfqdsiLKQLCSV-----PCP 1298 SM00209: domain 15 of 15, from 1303 to 1361: score 19.7, E = 0.068 *->wseWseWSpCSgvtCGgGgr...tegvrtRtRsslrvccspppprnq +eWseWS+C tC G r+ +t g+++R+R + + KIAA1679 1303 LTEWSEWSTCE-LTCIDG-RsfeTVGRQSRSR-----TFIIQSF--- 1339 nggepCs....EtrpCntqpnLqpCp<-* + +C+++ EtrpC++ +C KIAA1679 1340 ENQDSCPqqvlETRPCTGG----KCY 1361 //