hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09420751/chunk_1/iprscan-20080502-09420751.nocrc
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Query sequence: KIAA1681
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00788.13.ls Ras association (RalGDS/AF-6) domain            67.6    3.7e-17   1
PF00788.13.fs Ras association (RalGDS/AF-6) domain            65.7    9.3e-17   1
PF00169.19.fs PH domain                                       55.4    2.1e-16   1
PF00169.19.ls PH domain                                       57.5    4.2e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00788.13.fs   1/1     255   342 ..     1    97 []    65.7  9.3e-17
PF00788.13.ls   1/1     255   342 ..     1    97 []    67.6  3.7e-17
PF00169.19.fs   1/1     383   491 ..     1    92 []    55.4  2.1e-16
PF00169.19.ls   1/1     383   491 ..     1    92 []    57.5  4.2e-14

Alignments of top-scoring domains:
PF00788.13.fs: domain 1 of 1, from 255 to 342: score 65.7, E = 9.3e-17
                   *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe
                      ++ v+rV++ d++   +kt +v+++ T+++V+ +l++K ++    + 
    KIAA1681   255    KKLVIRVHMSDDS---SKTMMVDERQTVRQVLDNLMDKSHC--GYSL 296  

                   dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrred
                   d++LvE    +   ++er +++d+E+ ++++l++ rd+q+  +++ r e 
    KIAA1681   297 DWSLVE---TVSELQMER-IFEDHENLVENLLNWTRDSQNKLIFMERIEK 342  

                   <-*
                      
    KIAA1681     -     -    

PF00788.13.ls: domain 1 of 1, from 255 to 342: score 67.6, E = 3.7e-17
                   *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe
                      ++ v+rV++ d++   +kt +v+++ T+++V+ +l++K ++    + 
    KIAA1681   255    KKLVIRVHMSDDS---SKTMMVDERQTVRQVLDNLMDKSHC--GYSL 296  

                   dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrred
                   d++LvE    +   ++er +++d+E+ ++++l++ rd+q+  +++ r e 
    KIAA1681   297 DWSLVE---TVSELQMER-IFEDHENLVENLLNWTRDSQNKLIFMERIEK 342  

                   <-*
                      
    KIAA1681     -     -    

PF00169.19.fs: domain 1 of 1, from 383 to 491: score 55.4, E = 2.1e-16
                   *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk....kkpkgsi
                      +++eG L++k +gkkswkkRyf L+ + ++y  ++k + + +++  +
    KIAA1681   383    PEIEGVLWLKDdGKKSWKKRYFLLRASGIYYVPKGKakvsRDLVCFL 429  

                   pLsgiqvtkvpdn......krkncFeirt.dr.....etlllqaeseeer
                    L++++v++  d++++ + + ++c+++++++ +++++   +l++++   +
    KIAA1681   430 QLDHVNVYYGQDYrnkykaPTDYCLVLKHpQIqkksqYIKYLCCDDVRTL 479  

                   keWvkaiqsair<-*
                   ++Wv+ i+ a +   
    KIAA1681   480 HQWVNGIRIAKY    491  

PF00169.19.ls: domain 1 of 1, from 383 to 491: score 57.5, E = 4.2e-14
                   *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk....kkpkgsi
                      +++eG L++k +gkkswkkRyf L+ + ++y  ++k + + +++  +
    KIAA1681   383    PEIEGVLWLKDdGKKSWKKRYFLLRASGIYYVPKGKakvsRDLVCFL 429  

                   pLsgiqvtkvpdn......krkncFeirt.dr.....etlllqaeseeer
                    L++++v++  d++++ + + ++c+++++++ +++++   +l++++   +
    KIAA1681   430 QLDHVNVYYGQDYrnkykaPTDYCLVLKHpQIqkksqYIKYLCCDDVRTL 479  

                   keWvkaiqsair<-*
                   ++Wv+ i+ a +   
    KIAA1681   480 HQWVNGIRIAKY    491  

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