hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09435022/chunk_1/iprscan-20080502-09435022.nocrc
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Query sequence: KIAA1682
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF06602.5.ls   Myotubularin-related                      -7.8    0.00016   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF06602.5.ls     1/1     261   325 ..     1   123 []    -7.8  0.00016

Alignments of top-scoring domains:
PF06602.5.ls: domain 1 of 1, from 261 to 325: score -7.8, E = 0.00016
                   *->YelCpsYPakLvVPksisDdeLkkvAkFRsrgRlPVLswrHqengAv
                      Y++C+  Pa++vVP+ + ++ +++    ++++ +P ++w +  ng++
    KIAA1682   261    YKVCERLPAYFVVPTPLPEENVQR----FQGHGIPIWCWSC-HNGSA 302  

                   IvRcSQPLvGfsgkRckeDEkllkailkanaiDekiqskklyIvDaRprt
                   ++ +S                       a +                   
    KIAA1682   303 LLKMS-----------------------ALP------------------- 310  

                   nAlaNrAkGGGyEneenYpnaelvfl<-*
                               E+++   ++ + fl   
    KIAA1682   311 -----------KEQDDGILQIQKSFL    325  

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