hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09503764/chunk_1/iprscan-20080502-09503764.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1686 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00169.19.fs PH domain 85.3 1.7e-25 1 PF00169.19.ls PH domain 87.3 4.4e-23 1 PF00397.16.ls WW domain 58.7 1.8e-14 2 PF00397.16.fs WW domain 54.7 2.4e-14 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00397.16.ls 1/2 13 42 .. 1 30 [] 29.2 1.3e-05 PF00397.16.fs 1/2 13 42 .. 1 30 [] 27.2 1.2e-06 PF00397.16.fs 2/2 59 88 .. 1 30 [] 27.5 1e-06 PF00397.16.ls 2/2 59 88 .. 1 30 [] 29.5 1.1e-05 PF00169.19.fs 1/1 171 269 .. 1 92 [] 85.3 1.7e-25 PF00169.19.ls 1/1 171 269 .. 1 92 [] 87.3 4.4e-23 Alignments of top-scoring domains: PF00397.16.ls: domain 1 of 2, from 13 to 42: score 29.2, E = 1.3e-05 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp W+ ++ Gr++++N + k+T+W +P KIAA1686 13 LPRSWTYGITRGGRVFFINEEAKSTTWLHP 42 PF00397.16.fs: domain 1 of 2, from 13 to 42: score 27.2, E = 1.2e-06 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp W+ ++ Gr++++N + k+T+W +P KIAA1686 13 LPRSWTYGITRGGRVFFINEEAKSTTWLHP 42 PF00397.16.fs: domain 2 of 2, from 59 to 88: score 27.5, E = 1e-06 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp gWee+++ +G YY+Nhn ++ + +P KIAA1686 59 LPTGWEEAYTFEGARYYINHNERKVTCKHP 88 PF00397.16.ls: domain 2 of 2, from 59 to 88: score 29.5, E = 1.1e-05 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp gWee+++ +G YY+Nhn ++ + +P KIAA1686 59 LPTGWEEAYTFEGARYYINHNERKVTCKHP 88 PF00169.19.fs: domain 1 of 1, from 171 to 269: score 85.3, E = 1.7e-25 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL v+++GwL+k+ ++g k wkkR+fvL+d +L+yy+d+k++ gsi L KIAA1686 171 VVRRGWLYKQDstGMKLWKKRWFVLSDLCLFYYRDEKeEGILGSILL 217 sgiqvtkvpdn...krkncFeirt.dretlllqaeseeerkeWvkaiqsa + q+ +++ ++ +rk++F+ +++ +t+++++++ +e++ W+ka+ +a KIAA1686 218 PSFQIALLTSEdhiNRKYAFKAAHpNMRTYYFCTDTGKEMELWMKAMLDA 267 ir<-* + KIAA1686 268 AL 269 PF00169.19.ls: domain 1 of 1, from 171 to 269: score 87.3, E = 4.4e-23 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL v+++GwL+k+ ++g k wkkR+fvL+d +L+yy+d+k++ gsi L KIAA1686 171 VVRRGWLYKQDstGMKLWKKRWFVLSDLCLFYYRDEKeEGILGSILL 217 sgiqvtkvpdn...krkncFeirt.dretlllqaeseeerkeWvkaiqsa + q+ +++ ++ +rk++F+ +++ +t+++++++ +e++ W+ka+ +a KIAA1686 218 PSFQIALLTSEdhiNRKYAFKAAHpNMRTYYFCTDTGKEMELWMKAMLDA 267 ir<-* + KIAA1686 268 AL 269 //