hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09503764/chunk_1/iprscan-20080502-09503764.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1686 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00233 73.5 2.6e-17 1 SM00456 57.0 2.5e-12 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00456 1/2 12 44 .. 1 34 [] 27.1 0.0024 SM00456 2/2 58 90 .. 1 34 [] 29.9 0.00035 SM00233 1/1 171 271 .. 1 82 [] 73.5 2.6e-17 Alignments of top-scoring domains: SM00456: domain 1 of 2, from 12 to 44: score 27.1, E = 0.0024 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* +lP W+ +++ Gr++++N e k t+W +P+ KIAA1686 12 SLPRSWTYGITRG-GRVFFINEEAKSTTWLHPVT 44 SM00456: domain 2 of 2, from 58 to 90: score 29.9, E = 0.00035 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* +lP gWee+++ + G YY+Nh+ ++ + +P+ KIAA1686 58 DLPTGWEEAYTFE-GARYYINHNERKVTCKHPVT 90 SM00233: domain 1 of 1, from 171 to 271: score 73.5, E = 2.6e-17 *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk...kpkgsipL v+++GwL+k+ +++ + wkkr+fvL + +L+yy++++++ gsi L KIAA1686 171 VVRRGWLYKQDstgMkLWKKRWFVLSDLCLFYYRDEkeeGILGSILL 217 sgcsvre.p.........cFeivt.dr.tlllqAeseeereeWvealqsa + ++ +++++ +++ +F+ +++ +t+++++++ +e+e W++a+ +a KIAA1686 218 PSFQIALlTsedhinrkyAFKAAHpNMrTYYFCTDTGKEMELWMKAMLDA 267 iaka<-* + + KIAA1686 268 ALVQ 271 //