hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09522042/chunk_1/iprscan-20080502-09522042.nocrc
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Query sequence: KIAA1687
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00612                                                 330.5    1.2e-94   6
SM00225                                                 107.1      2e-27   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1     192   289 ..     1   114 []   107.1    2e-27
SM00612      1/6     440   486 ..     1    55 []    48.6  8.2e-10
SM00612      2/6     487   533 ..     1    55 []    60.7  1.8e-13
SM00612      3/6     534   580 ..     1    55 []    60.0  3.1e-13
SM00612      4/6     581   627 ..     1    55 []    74.3  1.5e-17
SM00612      5/6     628   680 ..     1    55 []    35.5  7.1e-06
SM00612      6/6     681   727 ..     1    55 []    51.3  1.3e-10

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 192 to 289: score 107.1, E = 2e-27
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv l++g           +++a  H++vL+a    S+yF a+f+++
    KIAA1687   192    CDVLLIAGH---------LRIPA--HRLVLSAV---SDYFAAMFTNd 224  

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                     + +++++ +++      v+p a+  l+++ Yt+ l l+e+   ++e+l
    KIAA1687   225 vleakqeeVRMEG------VDPNALNSLVQYAYTgVLQLKED---TIESL 265  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   L++A +l    q+++++++C +fl+k+l   
    KIAA1687   266 LAAACLL----QLTqVIDVCSNFLIKQL    289  

SM00612: domain 1 of 6, from 440 to 486: score 48.6, E = 8.2e-10
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                       +Y+vGG+d         +  + ++E+YD++tn W  +  M+ +R  
    KIAA1687   440    ALYAVGGMDA--------MKGTTTIEKYDLRTNSWLHIGTMNGRRLQ 478  

                   agvaving<-*
                   +gvavi++   
    KIAA1687   479 FGVAVIDN    486  

SM00612: domain 2 of 6, from 487 to 533: score 60.7, E = 1.8e-13
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      k+YvvGG+dg          +l++vE+++p  + W+++p+M+t R g
    KIAA1687   487    KLYVVGGRDGL--------KTLNTVECFNPVGKIWTVMPPMSTHRHG 525  

                   agvaving<-*
                    gva+++g   
    KIAA1687   526 LGVATLEG    533  

SM00612: domain 3 of 6, from 534 to 580: score 60.0, E = 3.1e-13
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                        Y+vGG+dg        +++l++vE++Dpe  +W  v+sM+tpRs 
    KIAA1687   534    PMYAVGGHDG--------WSYLNTVERWDPEGRQWNYVASMSTPRST 572  

                   agvaving<-*
                   +gv+++n+   
    KIAA1687   573 VGVVALNN    580  

SM00612: domain 4 of 6, from 581 to 627: score 74.3, E = 1.5e-17
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      k+Y++GG+dg        +++lks E++Dp+tnkW+ +++M+ +R g
    KIAA1687   581    KLYAIGGRDG--------SSCLKSMEYFDPHTNKWSLCAPMSKRRGG 619  

                   agvaving<-*
                   +gva+ ng   
    KIAA1687   620 VGVATYNG    627  

SM00612: domain 5 of 6, from 628 to 680: score 35.5, E = 7.1e-06
                   *->kiYvvGGfdgttrclpgegqrlks.....vEvYDpetnkWrpvpsMp
                       +YvvGG+d        +++ + s+ ++ vE+YDp+ + W+ v++++
    KIAA1687   628    FLYVVGGHDA-------PASNHCSrlsdcVERYDPKGDSWSTVAPLS 667  

                   tpRsgagvaving<-*
                   +pR  ++v+ +++   
    KIAA1687   668 VPRDAVAVCPLGD    680  

SM00612: domain 6 of 6, from 681 to 727: score 51.3, E = 1.3e-10
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      k+YvvGG+dg+        ++l++vE YD  +n+W++  + + +R+g
    KIAA1687   681    KLYVVGGYDGH--------TYLNTVESYDAQRNEWKEEVPVNIGRAG 719  

                   agvaving<-*
                   a+v+v++    
    KIAA1687   720 ACVVVVKL    727  

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