HUGE

Gene/Protein Characteristic Table for KIAA1691

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00888
Accession No. :	AB051478
Description :	tweety 3.
HUGO Gene Name :	tweety homolog 3 (Drosophila) (TTYH3)
Clone Name :	fj00597s1 [Vector Info]
Flexi ORF Clone :	pF1KSDA1691
Source :	Human fetal brain
Note :	We replaced fj00597, former representative clones for KIAA1691 with fj00597s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 4816 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3062 bp

Genome contig ID gi89161213f_2538194
PolyA signal sequence
(AATAAA,-17)
+----*----+----*----+----*----+----
TTGGGTTTCATGTTTTAAAATAAATTTTAAAAAGC
Flanking genome sequence
(132768 - 132817)
----+----*----+----*----+----*----+----*----+----*
AAGCCTCTCTTCCTGAGCTGCTTTGGCTCCTGGCTGGGCGCTGGTAGGGA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 7 f 2638134 2670960 14 99.3 Perfect prediction

Features of the protein sequence	Description

Length: 558 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q9C0H2	0	100.0	Protein tweety ...	Homo sapiens
EAW87268	2e-208	96.9	tweety homolog ...	Homo sapiens
EDL89726	4.4e-207	94.8	tweety homolog ...	Rattus norvegicus
Q6P5F7	1.9e-206	94.8	Protein tweety ...	Mus musculus
BAC34944	5.4e-206	94.6	unnamed protein...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR006990 60 465 PF04906 Tweety

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR006990	60	465	PF04906	Tweety

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 32 PGPAMAGVSYAAPWWVSLLHRLP 54 SECONDARY 23

2 78 LLLLGAAALACLALDLLFLLFYS 100 PRIMARY 23

3 118 CCCTAWCVIIATLVCSAGIAVG 139 PRIMARY 22

4 210 LETLLGYTAAIPFWRNTAVSLEV 232 SECONDARY 23

5 244 RWLGYLGLLLLDVIICLLVLVGL 266 PRIMARY 23

6 275 VGVCLLGVLALVISWGALGLELA 297 PRIMARY 23

7 423 LIYLALFSFVTALMFSSIVCSVP 445 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	32	PGPAMAGVSYAAPWWVSLLHRLP	54	SECONDARY	23
2	78	LLLLGAAALACLALDLLFLLFYS	100	PRIMARY	23
3	118	CCCTAWCVIIATLVCSAGIAVG	139	PRIMARY	22
4	210	LETLLGYTAAIPFWRNTAVSLEV	232	SECONDARY	23
5	244	RWLGYLGLLLLDVIICLLVLVGL	266	PRIMARY	23
6	275	VGVCLLGVLALVISWGALGLELA	297	PRIMARY	23
7	423	LIYLALFSFVTALMFSSIVCSVP	445	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CTGAGGCCTGAACCATTTTGC

Primer_r
: CCCAAGCTGAATAGAAACCAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 7

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	3062 bp
Genome contig ID	gi89161213f_2538194
PolyA signal sequence (AATAAA,-17)	+--------+--------+----*----+---- TTGGGTTTCATGTTTTAAAATAAATTTTAAAAAGC
Flanking genome sequence (132768 - 132817)	----+--------+--------+--------+--------+----* AAGCCTCTCTTCCTGAGCTGCTTTGGCTCCTGGCTGGGCGCTGGTAGGGA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	7	f	2638134	2670960	14	99.3	Perfect prediction

Primer_f	: CTGAGGCCTGAACCATTTTGC
Primer_r	: CCCAAGCTGAATAGAAACCAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1691

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information