# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj05607.fasta.huge -Q ../query/KIAA1692.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1692, 855 aa
 vs ./tmplib.25089 library

1986650 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.8127+/-0.00507; mu= 10.0560+/- 0.344
 mean_var=103.6322+/-25.089, 0's: 0 Z-trim: 7  B-trim: 0 in 0/40
 Lambda= 0.125987

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0041  ( 781 res)   ha00469s1                   ( 781)  147 38.0  0.0048
KIAA0302  ( 2414 res)   hf00409s2                  (2414)  149 38.8  0.0086


>>KIAA0041  ( 781 res)   ha00469s1                        (781 aa)
 initn: 104 init1:  76 opt: 147  Z-score: 146.5  bits: 38.0 E(): 0.0048
Smith-Waterman score: 147;  28.829% identity (62.162% similar) in 111 aa overlap (740-850:271-373)

     710       720       730       740       750       760         
KIAA16 FGFSETAGAWQCFMCNNPEKATVVNQDGQPLIEGKLKEKQVRWKFIKRWKTRYFTLAGNQ
                                     ..:: :  :..   : : :. :.:.. .::
KIAA00 MEQKHSTIQQKDFSSDDSKLEYNVDAANGIVMEGYL-FKRASNAF-KTWNRRWFSIQNNQ
              250       260       270        280        290        

     770       780       790       800       810       820         
KIAA16 LLFQKGKSKDDPDDCPIELSKVQSVKAVAKKRRDRSLPRAFEIFTDNKTYVFKAKDEKNA
       :..:: : ::.:    .:  .. .::     .:       ::. . .:. ...: .::  
KIAA00 LVYQK-KFKDNPT-VVVEDLRLCTVKHCEDIERRF----CFEVVSPTKSCMLQADSEKLR
      300        310        320       330           340       350  

     830       840       850                                       
KIAA16 EEWLQCINVAVAQAKERESREVTTYL                                  
       . :.. .....: : .... :                                       
KIAA00 QAWIKAVQTSIATAYREKGDESEKLDKKSSPSTGSLDSGNESKEKLLKGESALQRVQCIP
            360       370       380       390       400       410  

>>KIAA0302  ( 2414 res)   hf00409s2                       (2414 aa)
 initn:  96 init1:  70 opt: 149  Z-score: 142.0  bits: 38.8 E(): 0.0086
Smith-Waterman score: 149;  32.479% identity (58.120% similar) in 117 aa overlap (738-843:2242-2354)

       710       720       730       740       750            760  
KIAA16 DVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIEGKLKEKQVRWKFIKR-----WKTRY
                                     :  .:: : .::    : :.     :.. :
KIAA03 GPAPSAMPQSRSTESAHAATLPPRGPEPSAQEQMEGMLCRKQEMEAFGKKAANRSWQNVY
            2220      2230      2240      2250      2260      2270 

            770          780         790       800       810       
KIAA16 FTLAGNQLLFQK---GKSKDDP--DDCPIELSKVQSVKAVAKKRRDRSLPRAFEI-FTDN
        .:  ..: : :   . :   :   . :. :...:.  .::   : :.  ..:.. . :.
KIAA03 CVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQG--SVAFDYRKRK--HVFKLGLQDG
            2280      2290      2300        2310        2320       

        820       830       840       850                          
KIAA16 KTYVFKAKDEKNAEEWLQCINVAVAQAKERESREVTTYL                     
       : :.:.:::: .   ::. .:.:.: :                                 
KIAA03 KEYLFQAKDEAEMSSWLRVVNAAIATASSASGEPEEPVVPSTTRGMTRAMTMPPVSPVGA
      2330      2340      2350      2360      2370      2380       




855 residues in 1 query   sequences
1986650 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:13:10 2008 done: Thu Dec 18 15:13:11 2008
 Total Scan time:  0.610 Total Display time:  0.050

Function used was FASTA [version 34.26.5 April 26, 2007]