hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10025557/chunk_1/iprscan-20080502-10025557.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1693 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06758.4.ls Repeat of unknown function (DUF1220) 945.8 1.6e-281 7 PF06758.4.fs Repeat of unknown function (DUF1220) 932.1 2.1e-277 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06758.4.fs 1/7 138 201 .. 1 71 [] 118.9 1.8e-34 PF06758.4.ls 1/7 138 201 .. 1 71 [] 120.8 3.6e-33 PF06758.4.ls 2/7 409 471 .. 1 71 [] 119.2 1.1e-32 PF06758.4.fs 2/7 409 471 .. 1 71 [] 117.3 5.2e-34 PF06758.4.ls 3/7 495 558 .. 1 71 [] 123.5 5.4e-34 PF06758.4.fs 3/7 495 558 .. 1 71 [] 121.6 2.7e-35 PF06758.4.ls 4/7 567 633 .. 1 71 [] 140.4 4.5e-39 PF06758.4.fs 4/7 567 633 .. 1 71 [] 138.4 3e-40 PF06758.4.ls 5/7 642 708 .. 1 71 [] 145.0 1.8e-40 PF06758.4.fs 5/7 642 708 .. 1 71 [] 143.0 1.3e-41 PF06758.4.fs 6/7 717 783 .. 1 71 [] 143.6 8.8e-42 PF06758.4.ls 6/7 717 783 .. 1 71 [] 145.6 1.2e-40 PF06758.4.fs 7/7 812 878 .. 1 71 [] 149.3 1.9e-43 PF06758.4.ls 7/7 812 878 .. 1 71 [] 151.3 2.4e-42 Alignments of top-scoring domains: PF06758.4.fs: domain 1 of 7, from 138 to 201: score 118.9, E = 1.8e-34 *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD E++ e++aPR e+q+aeE+ +V++DSL++c++T+S+sh+++D KIAA1693 138 EKVL---ESSAPR---EVQKAEES-KVPEDSLEECAITCSNSHSPCD 177 SnQpYsstfyslEEqkvglaLDid<-* SnQp++++++++EE+kv+++L++d KIAA1693 178 SNQPHKNINITFEEDKVNSTLVVD 201 PF06758.4.ls: domain 1 of 7, from 138 to 201: score 120.8, E = 3.6e-33 *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD E++ e++aPR e+q+aeE+ +V++DSL++c++T+S+sh+++D KIAA1693 138 EKVL---ESSAPR---EVQKAEES-KVPEDSLEECAITCSNSHSPCD 177 SnQpYsstfyslEEqkvglaLDid<-* SnQp++++++++EE+kv+++L++d KIAA1693 178 SNQPHKNINITFEEDKVNSTLVVD 201 PF06758.4.ls: domain 2 of 7, from 409 to 471: score 119.2, E = 1.1e-32 *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD E++q +++aPR e+ +aeE+ EV++DSL++c++T+S+sh ++D KIAA1693 409 EKVQ---KSSAPR---EMPKAEEK-EVPEDSLEECAITCSNSHGPYD 448 SnQpYsstfyslEEqkvglaLDid<-* SnQp+++t++++EE+kv+++L i+ KIAA1693 449 SNQPHRKTKITFEEDKVDSTL-IG 471 PF06758.4.fs: domain 2 of 7, from 409 to 471: score 117.3, E = 5.2e-34 *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD E++q +++aPR e+ +aeE+ EV++DSL++c++T+S+sh ++D KIAA1693 409 EKVQ---KSSAPR---EMPKAEEK-EVPEDSLEECAITCSNSHGPYD 448 SnQpYsstfyslEEqkvglaLDid<-* SnQp+++t++++EE+kv+++L i+ KIAA1693 449 SNQPHRKTKITFEEDKVDSTL-IG 471 PF06758.4.ls: domain 3 of 7, from 495 to 558: score 123.5, E = 5.4e-34 *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD Ee++ +p++PR +Lqe+eE+ EV+Q+S+D++ysT+S+++e+++ KIAA1693 495 EEEK---GPVSPR---NLQESEEE-EVPQESWDEGYSTLSIPPEMLA 534 SnQpYsstfyslEEqkvglaLDid<-* S+Q+Ys tf+slEEq+v++a+Di+ KIAA1693 535 SYQSYSGTFHSLEEQQVCMAVDIG 558 PF06758.4.fs: domain 3 of 7, from 495 to 558: score 121.6, E = 2.7e-35 *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD Ee++ +p++PR +Lqe+eE+ EV+Q+S+D++ysT+S+++e+++ KIAA1693 495 EEEK---GPVSPR---NLQESEEE-EVPQESWDEGYSTLSIPPEMLA 534 SnQpYsstfyslEEqkvglaLDid<-* S+Q+Ys tf+slEEq+v++a+Di+ KIAA1693 535 SYQSYSGTFHSLEEQQVCMAVDIG 558 PF06758.4.ls: domain 4 of 7, from 567 to 633: score 140.4, E = 4.5e-39 *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD +edq e++ PRLsreL++++ p EVLQDSLDrcysTpS+++el+D KIAA1693 567 KEDQ---EATGPRLSRELLDEKGP-EVLQDSLDRCYSTPSGYLELTD 609 SnQpYsstfyslEEqkvglaLDid<-* S+QpY+s+fy lE+q+vg aLD+d KIAA1693 610 SCQPYRSAFYILEQQRVGWALDMD 633 PF06758.4.fs: domain 4 of 7, from 567 to 633: score 138.4, E = 3e-40 *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD +edq e++ PRLsreL++++ p EVLQDSLDrcysTpS+++el+D KIAA1693 567 KEDQ---EATGPRLSRELLDEKGP-EVLQDSLDRCYSTPSGYLELTD 609 SnQpYsstfyslEEqkvglaLDid<-* S+QpY+s+fy lE+q+vg aLD+d KIAA1693 610 SCQPYRSAFYILEQQRVGWALDMD 633 PF06758.4.ls: domain 5 of 7, from 642 to 708: score 145.0, E = 1.8e-40 *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD Eedq +p++PRLsreL++++Ep EVLQDSLDrcysTpS+++elpD KIAA1693 642 EEDQ---DPSCPRLSRELLDEKEP-EVLQDSLDRCYSTPSGYLELPD 684 SnQpYsstfyslEEqkvglaLDid<-* + QpY+s++yslEEq++glaLD+d KIAA1693 685 LGQPYRSAVYSLEEQYLGLALDVD 708 PF06758.4.fs: domain 5 of 7, from 642 to 708: score 143.0, E = 1.3e-41 *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD Eedq +p++PRLsreL++++Ep EVLQDSLDrcysTpS+++elpD KIAA1693 642 EEDQ---DPSCPRLSRELLDEKEP-EVLQDSLDRCYSTPSGYLELPD 684 SnQpYsstfyslEEqkvglaLDid<-* + QpY+s++yslEEq++glaLD+d KIAA1693 685 LGQPYRSAVYSLEEQYLGLALDVD 708 PF06758.4.fs: domain 6 of 7, from 717 to 783: score 143.6, E = 8.8e-42 *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD Eedq +pp+PRLsreL+ea Ep EVLQDSLDrcysTpSs++e+pD KIAA1693 717 EEDQ---GPPCPRLSRELLEAVEP-EVLQDSLDRCYSTPSSCLEQPD 759 SnQpYsstfyslEEqkvglaLDid<-* S+ pY+s+fy+lEE++vg++LD++ KIAA1693 760 SCLPYGSSFYALEEKHVGFSLDVG 783 PF06758.4.ls: domain 6 of 7, from 717 to 783: score 145.6, E = 1.2e-40 *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD Eedq +pp+PRLsreL+ea Ep EVLQDSLDrcysTpSs++e+pD KIAA1693 717 EEDQ---GPPCPRLSRELLEAVEP-EVLQDSLDRCYSTPSSCLEQPD 759 SnQpYsstfyslEEqkvglaLDid<-* S+ pY+s+fy+lEE++vg++LD++ KIAA1693 760 SCLPYGSSFYALEEKHVGFSLDVG 783 PF06758.4.fs: domain 7 of 7, from 812 to 878: score 149.3, E = 1.9e-43 *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD Eedq +pp+PRLs +L+e+eEp EVLQDSLDrcysTpS+ +elpD KIAA1693 812 EEDQ---NPPCPRLSGVLMEVEEP-EVLQDSLDRCYSTPSMFFELPD 854 SnQpYsstfyslEEqkvglaLDid<-* S+Q+Y+s+fys+EEq++++aLD+d KIAA1693 855 SFQHYRSVFYSFEEQHISFALDVD 878 PF06758.4.ls: domain 7 of 7, from 812 to 878: score 151.3, E = 2.4e-42 *->EedqaGleppaPRLsreLqeaeEpiEVLQDSLDrcysTpSsshelpD Eedq +pp+PRLs +L+e+eEp EVLQDSLDrcysTpS+ +elpD KIAA1693 812 EEDQ---NPPCPRLSGVLMEVEEP-EVLQDSLDRCYSTPSMFFELPD 854 SnQpYsstfyslEEqkvglaLDid<-* S+Q+Y+s+fys+EEq++++aLD+d KIAA1693 855 SFQHYRSVFYSFEEQHISFALDVD 878 //