# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj17028.fasta.huge -Q ../query/KIAA1705.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1705, 498 aa vs ./tmplib.25089 library 1987007 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.5492+/-0.00516; mu= 11.4012+/- 0.351 mean_var=112.5951+/-26.435, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.120869 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0725 ( 573 res) hk02781 ( 573) 288 61.0 2.4e-10 KIAA1457 ( 1359 res) fh16161s1 (1359) 203 46.6 1.3e-05 >>KIAA0725 ( 573 res) hk02781 (573 aa) initn: 552 init1: 158 opt: 288 Z-score: 277.5 bits: 61.0 E(): 2.4e-10 Smith-Waterman score: 462; 27.778% identity (52.688% similar) in 558 aa overlap (14-484:56-562) 10 20 30 40 KIAA17 NYNFSTASSSGTRLHRGYVEEATLE---DKPSQTTHIVFVVHG ..:: ::. ... .: : :.:::::: KIAA07 HNPKLMVHYQPVAGSDDWGSTPMEQGRPRTVKRG-VENISVDIHCGEPLQIDHLVFVVHG 30 40 50 60 70 80 50 60 70 80 90 KIAA17 IGQKMD-QGR-IIKNTAMMREAARKIEERHF-----SNHATHVEFLPVEWRSKLTLDGDT :: : . : :.. . .: .. .. . :: ... .::::::.:.: : : KIAA07 IGPACDLRFRSIVQCVNDFRSVSLNLLQTHFKKAQENQQIGRVEFLPVNWHSPLHSTGVD 90 100 110 120 130 140 100 110 120 130 140 150 KIAA17 VD--SITPDKVRGLRDMLNSSAMDIMYYTSPLYRDELVKGLQQELNRLYSLFCSRNPDFE :: :: .. :: . :.. .:...:.:: : . .: . .:.::.:.:: .::::: KIAA07 VDLQRITLPSINRLRHFTNDTILDVFFYNSPTYCQTIVDTVASEMNRIYTLFLQRNPDF- 150 160 170 180 190 200 160 170 180 KIAA17 EKGGKVSIVSHSLGCVITYDIMT----------------------GWNPVRLYEQL--LQ ::: :::..:::: .: .::.: : .:. : :.: :: KIAA07 -KGG-VSIAGHSLGSLILFDILTNQKDSLGDIDSEKGSLNIVMDQGDTPT-LEEDLKKLQ 210 220 230 240 250 260 190 200 210 220 KIAA17 K-------EEELPDERWMSYEERHLLDELYIT----KRRLKEIEERLH--GLK------- :.: :.. .. . :.:. : :. :. . : . :.: KIAA07 LSEFFDIFEKEKVDKEALALCTDRDLQEIGIPLGPRKKILNYFSTRKNSMGIKRPAPQPA 270 280 290 300 310 320 230 240 250 260 KIAA17 ------------ASSMTQT---------------PALKFKVENFFCMGSPLAVFLALRGI .:: :.. : : .: : :: .:::...::..::. KIAA07 SGANIPKESEFCSSSNTRNGDYLDVGIGQVSVKYPRLIYKPEIFFAFGSPIGMFLTVRGL 330 340 350 360 370 380 270 280 290 300 310 320 KIAA17 RPGNTGSQDHILPREICNRLLNIFHPTDPVAYRLEPLILKHYSNISPVQIHWYNTSNPLP . . .. .: :. ..::.:: ::::::.::.. . :... :. KIAA07 KRIDP---NYRFP--TCKGFFNIYHPFDPVAYRIEPMV------VPGVEFE------PML 390 400 410 420 330 340 350 360 370 380 KIAA17 YEHMKPSFLNPAKEPTSVSENEGISTIPSPVTSPVLSRRHYGESITNIGKASILGAASIG : : ... . ::.. . . : ..::. .. KIAA07 IPHHK------GRKRMHLELREGLTRMSMDL------------------KNNLLGSLRMA 430 440 450 390 400 410 420 430 KIAA17 -KGLGGMLFSRFGRSSTTQSSETSKDSMEDEKKPVASP-SATTVGTQTLPHSSSGFLDSA :.. . . : : . .:. .: .. . : . ....: ..:: . :.:... KIAA07 WKSFTRAPYPALQASETPEETEAEPESTSEKPSDVNTEETSVAVKEEVLP-INVGMLNGG 460 470 480 490 500 510 440 450 460 470 480 490 KIAA17 LELDHRIDFELREGLVES--RYWSAVTSHTAYWSSLDVALFLLTFMYKHEHDDDAKPNLD .:::. :.: .:: .: :. :: :: : :..:..: .:. KIAA07 ----QRIDYVLQEKPIESFNEYLFALQSHLCYWESEDTVLLVLKEIYQTQGIFLDQPLQ 520 530 540 550 560 570 KIAA17 PI >>KIAA1457 ( 1359 res) fh16161s1 (1359 aa) initn: 200 init1: 98 opt: 203 Z-score: 192.8 bits: 46.6 E(): 1.3e-05 Smith-Waterman score: 203; 22.826% identity (51.812% similar) in 276 aa overlap (224-487:715-976) 200 210 220 230 240 250 KIAA17 DERWMSYEERHLLDELYITKRRLKEIEERLHGLKASSMTQTPAL---KFKVENFFCMGSP :. ... . : :: :.. ..: .: : KIAA14 STYELDTIQQHQAFLSSLHASVLRTEPCSRHSSSSTMLDGTGALGRFDFEITDLFLFGCP 690 700 710 720 730 740 260 270 280 290 300 KIAA17 LAVFLALRG-IRPGNTGSQDHILPREICNRLLNIFHPTDPVAYRLEPLILKHYSNISPVQ :.. :::: . : . : . : :... :.:::.:: : :::::. ... . : . KIAA14 LGLVLALRKTVIP----ALDVFQLRPACQQVYNLFHPADPSASRLEPLLERRFHALPPFS 750 760 770 780 790 800 310 320 330 340 350 360 KIAA17 IHWYNTSNPLPYEHMKPSFLNPAKEPTSVSENEGISTIPS-----PVTSPVLSRRHYGES . :. :: . ..: : :. .. .: .. :: . KIAA14 VPRYQRY-PLGDGCSTLLVETVQRNPELVLEGGPLAPLPHGDGFLETSMPVPAPTWQDGP 810 820 830 840 850 370 380 390 400 410 420 KIAA17 ITNIGKASILGAASIGKGLGGMLFSRFGRSSTTQSSETSKDSMEDEKKPVASPSATTVGT . .....: . . . :.. : :. .. .:. . . .:: . . . KIAA14 RPGCAESDVLQTHNAA-------FQEHGAPSSPGTAPASRGFRRASEISIASQVSGMAES 860 870 880 890 900 910 430 440 450 460 470 480 KIAA17 QTLPHSSSGFLDSALELDHRIDFELREGLVESRYWSAVTSH---TAYWSSLDVALFLLTF : :: . . . ..:::. : . . . ... : ..:: : ::. ::: KIAA14 YTA--SSIAQIAAKWWGQKRIDYALYCPDALTAFPTVALPHLFHASYWESTDVVSFLLRQ 920 930 940 950 960 970 490 KIAA17 MYKHEHDDDAKPNLDPI ...:.. KIAA14 VMRHDNSSILELDGKEVSVFTPSKPREKWQRKRTHVKLRNVTANHRINDALANEDGPQVL 980 990 1000 1010 1020 1030 498 residues in 1 query sequences 1987007 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:13:41 2008 done: Thu Dec 18 15:13:42 2008 Total Scan time: 0.450 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]