hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10245591/chunk_1/iprscan-20080502-10245591.nocrc
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Query sequence: KIAA1706
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00633.13.fs Helix-hairpin-helix motif                  41.7    1.7e-11   3
PF03372.13.fs Endonuclease/Exonuclease/phosphatase fa    41.0    2.3e-11   1
PF03372.13.ls Endonuclease/Exonuclease/phosphatase fa    43.0    9.6e-10   1
PF00633.13.ls Helix-hairpin-helix motif                  42.6    1.2e-09   2

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00633.13.fs   1/3      42    71 ..     1    30 []    26.8  4.6e-07
PF00633.13.ls   1/2      42    71 ..     1    30 []    28.9  1.7e-05
PF03372.13.fs   1/1     265   542 ..     1   198 []    41.0  2.3e-11
PF03372.13.ls   1/1     265   542 ..     1   198 []    43.0  9.6e-10

Alignments of top-scoring domains:
PF00633.13.fs: domain 1 of 3, from 42 to 71: score 26.8, E = 4.6e-07
                   *->slegikpasreeLlalpGVGpktAeaIlsy<-*
                      +  +i +a++eeL++lpGV +++A++I +y   
    KIAA1706    42    ERLNINTATEEELMTLPGVTRAVARSIVEY    71   

PF00633.13.ls: domain 1 of 2, from 42 to 71: score 28.9, E = 1.7e-05
                   *->slegikpasreeLlalpGVGpktAeaIlsy<-*
                      +  +i +a++eeL++lpGV +++A++I +y   
    KIAA1706    42    ERLNINTATEEELMTLPGVTRAVARSIVEY    71   

PF03372.13.fs: domain 1 of 1, from 265 to 542: score 41.0, E = 2.3e-11
                   *->lkiltwNvnglra.l.s.......llellk.edpDvicLQEvklsp.
                      l+++twN +g++ ++ ++++ ++ ++  l ++++ ++++QE  +++ 
    KIAA1706   265    LRLATWNLQGCSVeKaNnpgvrevVCMTLLeNSIKLLAVQELLDREa 311  

                   s.ll.l.lg.gyvytgfgg.gggkgGvailsklplvsvi.gi........
                    +++  +l+++  +     +g +++  a++  +p +++ +g +  +   +
    KIAA1706   312 LeKFcTeLNqPTLPNIRKWkGPRGCWKAVVAEKPSNQLQkGAgyagflwd 361  

                   ...........................dli.rvilasgt.fvvvntHlpa
                      + + ++ ++ ++++++++++  ++     + +++  ++++vn Hl+a
    KIAA1706   362 aaagmelrdagsqesspsnghgklagpSPYlGRFKVGSHdLTLVNLHLAA 411  

                   gg............rldeRlaqyaelldflsfksdpvilcGDfNarpdei
                       +++++++++++  +  +++++l++ l+ + ++vi++GDf   pd+ 
    KIAA1706   412 LTllgsenpsknhsDGHRLASFAQTLQETLK-GEKDVIILGDFGQGPDSN 460  

                   ds.llk.igkstlelpitfppTywsyrgtsekkntgsrlDrilvsg.ll.
                   d++ l++ + ++  l+  + +T+ s+ +        + lD i+ s++l++
    KIAA1706   461 DYdILRkEKFHH--LIPAHTFTNISTKN----PQGSKSLDNIWISKsLKk 504  

                   rv.il.ille...............vlgSDHrPVlatl<-*
                    ++    +  ++ +++  +++ + +  +S H+PVla++   
    KIAA1706   505 VFtGHwAVVRegltnpwipdnwswgGVASEHCPVLAEF    542  

PF03372.13.ls: domain 1 of 1, from 265 to 542: score 43.0, E = 9.6e-10
                   *->lkiltwNvnglra.l.s.......llellk.edpDvicLQEvklsp.
                      l+++twN +g++ ++ ++++ ++ ++  l ++++ ++++QE  +++ 
    KIAA1706   265    LRLATWNLQGCSVeKaNnpgvrevVCMTLLeNSIKLLAVQELLDREa 311  

                   s.ll.l.lg.gyvytgfgg.gggkgGvailsklplvsvi.gi........
                    +++  +l+++  +     +g +++  a++  +p +++ +g +  +   +
    KIAA1706   312 LeKFcTeLNqPTLPNIRKWkGPRGCWKAVVAEKPSNQLQkGAgyagflwd 361  

                   ...........................dli.rvilasgt.fvvvntHlpa
                      + + ++ ++ ++++++++++  ++     + +++  ++++vn Hl+a
    KIAA1706   362 aaagmelrdagsqesspsnghgklagpSPYlGRFKVGSHdLTLVNLHLAA 411  

                   gg............rldeRlaqyaelldflsfksdpvilcGDfNarpdei
                       +++++++++++  +  +++++l++ l+ + ++vi++GDf   pd+ 
    KIAA1706   412 LTllgsenpsknhsDGHRLASFAQTLQETLK-GEKDVIILGDFGQGPDSN 460  

                   ds.llk.igkstlelpitfppTywsyrgtsekkntgsrlDrilvsg.ll.
                   d++ l++ + ++  l+  + +T+ s+ +        + lD i+ s++l++
    KIAA1706   461 DYdILRkEKFHH--LIPAHTFTNISTKN----PQGSKSLDNIWISKsLKk 504  

                   rv.il.ille...............vlgSDHrPVlatl<-*
                    ++    +  ++ +++  +++ + +  +S H+PVla++   
    KIAA1706   505 VFtGHwAVVRegltnpwipdnwswgGVASEHCPVLAEF    542  

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