HUGE

Gene/Protein Characteristic Table for KIAA1712

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00895
Accession No. :	AB051499
Description :
HUGO Gene Name :
Clone Name :	fj18794 [Vector Info]
Flexi ORF Clone :	pF1KSDA1712
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4283 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2939 bp

Genome contig ID gi89161207f_175355691
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
AATATATTTTAAAAATAAAACTTGAAAACGTTGGG
Flanking genome sequence
(122367 - 122416)
----+----*----+----*----+----*----+----*----+----*
ACTTTGTTTCATGCCATTCATTACTCATAACTTTATATAATTGATACACT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 4 f 175441646 175478056 12 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 391 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
XP_001086282	5.2e-141	94.4	hypothetical pr...	Macaca mulatta
BAF85173	9.6e-137	100.0	unnamed protein...	Homo sapiens
XP_001086406	1.9e-134	94.1	hypothetical pr...	Macaca mulatta
XP_001086517	2e-129	93.9	hypothetical pr...	Macaca mulatta
EDL28606	1.4e-90	67.3	cDNA sequence B...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GAAGAGATTACCTAGAGCTAC

Primer_r
: TTACCGAGACCTATTCAGAGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 4

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2939 bp
Genome contig ID	gi89161207f_175355691
PolyA signal sequence (AATAAA,-22)	+--------+--------+----*----+---- AATATATTTTAAAAATAAAACTTGAAAACGTTGGG
Flanking genome sequence (122367 - 122416)	----+--------+--------+--------+--------+----* ACTTTGTTTCATGCCATTCATTACTCATAACTTTATATAATTGATACACT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	4	f	175441646	175478056	12	99.2	Perfect prediction

Primer_f	: GAAGAGATTACCTAGAGCTAC
Primer_r	: TTACCGAGACCTATTCAGAGC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1712

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information