hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10383112/chunk_1/iprscan-20080502-10383112.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1714 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02210.14.fs Laminin G domain 377.1 2.5e-110 4 PF02210.14.ls Laminin G domain 337.9 1.6e-98 3 PF00054.13.fs Laminin G domain 146.7 9.3e-42 4 PF00054.13.ls Laminin G domain 142.7 9.3e-40 3 PF00754.15.ls F5/8 type C domain 136.9 5.2e-38 1 PF00754.15.fs F5/8 type C domain 135.1 7.9e-38 1 PF00008.17.fs EGF-like domain 50.4 3.1e-13 3 PF00008.17.ls EGF-like domain 54.0 4.5e-13 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00754.15.fs 1/1 91 222 .. 1 163 [] 135.1 7.9e-38 PF00754.15.ls 1/1 91 222 .. 1 163 [] 136.9 5.2e-38 PF00054.13.ls 1/3 260 392 .. 1 159 [] 38.4 2.2e-08 PF00054.13.fs 1/4 260 392 .. 1 159 [] 36.6 3.8e-10 PF02210.14.fs 1/4 260 389 .. 1 141 [] 118.8 2.6e-34 PF02210.14.ls 1/3 260 389 .. 1 141 [] 120.6 4e-33 PF02210.14.fs 2/4 446 570 .. 1 141 [] 99.1 1.4e-28 PF00054.13.fs 2/4 446 573 .. 1 159 [] 39.7 4.8e-11 PF00054.13.ls 2/3 446 573 .. 1 159 [] 41.5 2.6e-09 PF02210.14.ls 2/3 446 570 .. 1 141 [] 100.9 3.4e-27 PF00008.17.fs 1/3 599 631 .. 1 38 [] 30.9 9.3e-08 PF00008.17.ls 1/2 599 631 .. 1 38 [] 32.8 1.1e-06 PF00054.13.ls 3/3 869 991 .. 1 159 [] 62.7 1.1e-15 PF00054.13.fs 3/4 869 991 .. 1 159 [] 60.9 4e-17 PF02210.14.ls 3/3 869 988 .. 1 141 [] 116.3 8.1e-32 PF02210.14.fs 3/4 869 988 .. 1 141 [] 114.5 4.6e-33 PF00008.17.ls 2/2 1010 1044 .. 1 38 [] 21.3 0.0032 PF02210.14.fs 4/4 1094 1167 .. 1 79 [. 44.7 1.1e-12 Alignments of top-scoring domains: PF00754.15.fs: domain 1 of 1, from 91 to 222: score 135.1, E = 7.9e-38 *->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse + ++Sse s+s+g+g++rL+ DG ++W++ KIAA1714 91 SFSSSSELSSSHGPGFSRLNRR-----DGA-----------GGWTP- 120 kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggngyvksYkiqySd +++ qwlq+DLg+ +++t+v tqg++++ + +v+sY ++ Sd KIAA1714 121 LV------SNKYQWLQIDLGERMEVTAVATQGGYGSSD-WVTSYLLMFSD 163 DGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfdppikARY G + nW++++ + + F+gn+++d++v+ + pp +AR+ KIAA1714 164 GG-R--NWKQYRR--------EEsIWGFpGNtNADsVVHYRLQPPFEARF 202 vRivptswnggggiasraEl<-* +R+ p++wn+ g+i++r E+ KIAA1714 203 LRFLPLAWNPRGRIGMRIEV 222 PF00754.15.ls: domain 1 of 1, from 91 to 222: score 136.9, E = 5.2e-38 *->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse + ++Sse s+s+g+g++rL+ DG ++W++ KIAA1714 91 SFSSSSELSSSHGPGFSRLNRR-----DGA-----------GGWTP- 120 kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggngyvksYkiqySd +++ qwlq+DLg+ +++t+v tqg++++ + +v+sY ++ Sd KIAA1714 121 LV------SNKYQWLQIDLGERMEVTAVATQGGYGSSD-WVTSYLLMFSD 163 DGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfdppikARY G + nW++++ + + F+gn+++d++v+ + pp +AR+ KIAA1714 164 GG-R--NWKQYRR--------EEsIWGFpGNtNADsVVHYRLQPPFEARF 202 vRivptswnggggiasraEl<-* +R+ p++wn+ g+i++r E+ KIAA1714 203 LRFLPLAWNPRGRIGMRIEV 222 PF00054.13.ls: domain 1 of 3, from 260 to 392: score 38.4, E = 2.2e-08 *->FRTtepsGlLllgYn.GtqterrskkeigdDFlaleLvdGrlevsyd F++ +++G+Ll +G+ + + leL++G+l + ++ KIAA1714 260 FKAMQSNGILL--HReGQHGNH----------ITLELIKGKLVFFLN 294 lGsg....rlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearsk G+++ ++++ p++++ g l+D +WHsv +e ++++ Vd+ KIAA1714 295 SGNAklpsTIAPVTLTLGSL-LDDQHWHSVLIELLDTQVNFTVDKHT--- 340 ktLgGsvvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaisp ++ ++++ + Ld++ + +GG+P + ++r+ ++ KIAA1714 341 -------HHFQAKGDSSY----LDLNFEISFGGIP----TPGRSRAFRRK 375 sfkGCirdviingkpld<-* sf+GC+ +++ ng+ + KIAA1714 376 SFHGCLENLYYNGVDVT 392 PF00054.13.fs: domain 1 of 4, from 260 to 392: score 36.6, E = 3.8e-10 *->FRTtepsGlLllgYn.GtqterrskkeigdDFlaleLvdGrlevsyd F++ +++G+Ll +G+ + + leL++G+l + ++ KIAA1714 260 FKAMQSNGILL--HReGQHGNH----------ITLELIKGKLVFFLN 294 lGsg....rlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearsk G+++ ++++ p++++ g l+D +WHsv +e ++++ Vd+ KIAA1714 295 SGNAklpsTIAPVTLTLGSL-LDDQHWHSVLIELLDTQVNFTVDKHT--- 340 ktLgGsvvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaisp ++ ++++ + Ld++ + +GG+P + ++r+ ++ KIAA1714 341 -------HHFQAKGDSSY----LDLNFEISFGGIP----TPGRSRAFRRK 375 sfkGCirdviingkpld<-* sf+GC+ +++ ng+ + KIAA1714 376 SFHGCLENLYYNGVDVT 392 PF02210.14.fs: domain 1 of 4, from 260 to 389: score 118.8, E = 2.6e-34 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F+ q+nG+Ll+ +g++g + +++LeL+ G+lv+ ++ KIAA1714 260 FKA-MQSNGILLHREGQhG---------N-HITLELIKGKLVFFLNS 295 G......sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g. G+ + +++ ++v+lt g+ l+D +WH+V +e +++v ++VD+++++ + KIAA1714 296 GnaklpsTIApVTLTLGsLLDDQHWHSVLIELLDTQVNFTVDKHtHHfQa 345 spgssdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCir ++ss +l+ln+++ +GG+p ++s++ r +++F+GC++ KIAA1714 346 KGDSS---YLDLNFEISFGGIPTPGRSRAFR----------RkSFHGCLE 382 nvringe<-* n+++ng+ KIAA1714 383 NLYYNGV 389 PF02210.14.ls: domain 1 of 3, from 260 to 389: score 120.6, E = 4e-33 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F+ q+nG+Ll+ +g++g + +++LeL+ G+lv+ ++ KIAA1714 260 FKA-MQSNGILLHREGQhG---------N-HITLELIKGKLVFFLNS 295 G......sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g. G+ + +++ ++v+lt g+ l+D +WH+V +e +++v ++VD+++++ + KIAA1714 296 GnaklpsTIApVTLTLGsLLDDQHWHSVLIELLDTQVNFTVDKHtHHfQa 345 spgssdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCir ++ss +l+ln+++ +GG+p ++s++ r +++F+GC++ KIAA1714 346 KGDSS---YLDLNFEISFGGIPTPGRSRAFR----------RkSFHGCLE 382 nvringe<-* n+++ng+ KIAA1714 383 NLYYNGV 389 PF02210.14.fs: domain 2 of 4, from 446 to 570: score 99.1, E = 1.4e-28 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl FRT + G Ll+ + ++g s+ + L+L+dG+l+l++ KIAA1714 446 FRT-WNRAGHLLFGELRrG--------SG-SFVLFLKDGKLKLSLFQ 482 Gsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd ++ + +t g lnDGqWH+Vs++ + +++ ++VD+ ++v+ KIAA1714 483 PGQSpRNVTAGaGLNDGQWHSVSFSAKWSHMNVVVDDDtAVqPlVA---- 528 tlslnlngp.lylGGlpesskssllrliaaqnlvtvs.gFvGCirnvrin l+ +g+++y+GG+ ++s+ s+++++ +gF+GC+r ++i+ KIAA1714 529 --VLIDSGDtYYFGGCLDNSSGSGCKSP--------LgGFQGCLRLITIG 568 ge<-* ++ KIAA1714 569 DK 570 PF00054.13.fs: domain 2 of 4, from 446 to 573: score 39.7, E = 4.8e-11 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevs.yd FRT++ G Ll ++ +++ +s ++l L dG+l++s ++ KIAA1714 446 FRTWNRAGHLL--FGELRRGSGS--------FVLFLKDGKLKLSlFQ 482 lGsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLg G+ p v++g+ lnDG+WHsv+ + ++++++ Vd+ KIAA1714 483 PGQS---PRNVTAGAG-LNDGQWHSVSFSAKWSHMNVVVDDDT------- 521 GsvvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkG +pl a +d + y+GG d++ ++ + +f G KIAA1714 522 -----AVQPLVAVL----IDSGDTYYFGGCL--DNSSGSGCKSPLGGFQG 560 Cirdviingkpld<-* C+r + i+ k +d KIAA1714 561 CLRLITIGDKAVD 573 PF00054.13.ls: domain 2 of 3, from 446 to 573: score 41.5, E = 2.6e-09 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevs.yd FRT++ G Ll ++ +++ +s ++l L dG+l++s ++ KIAA1714 446 FRTWNRAGHLL--FGELRRGSGS--------FVLFLKDGKLKLSlFQ 482 lGsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLg G+ p v++g+ lnDG+WHsv+ + ++++++ Vd+ KIAA1714 483 PGQS---PRNVTAGAG-LNDGQWHSVSFSAKWSHMNVVVDDDT------- 521 GsvvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkG +pl a +d + y+GG d++ ++ + +f G KIAA1714 522 -----AVQPLVAVL----IDSGDTYYFGGCL--DNSSGSGCKSPLGGFQG 560 Cirdviingkpld<-* C+r + i+ k +d KIAA1714 561 CLRLITIGDKAVD 573 PF02210.14.ls: domain 2 of 3, from 446 to 570: score 100.9, E = 3.4e-27 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl FRT + G Ll+ + ++g s+ + L+L+dG+l+l++ KIAA1714 446 FRT-WNRAGHLLFGELRrG--------SG-SFVLFLKDGKLKLSLFQ 482 Gsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd ++ + +t g lnDGqWH+Vs++ + +++ ++VD+ ++v+ KIAA1714 483 PGQSpRNVTAGaGLNDGQWHSVSFSAKWSHMNVVVDDDtAVqPlVA---- 528 tlslnlngp.lylGGlpesskssllrliaaqnlvtvs.gFvGCirnvrin l+ +g+++y+GG+ ++s+ s+++++ +gF+GC+r ++i+ KIAA1714 529 --VLIDSGDtYYFGGCLDNSSGSGCKSP--------LgGFQGCLRLITIG 568 ge<-* ++ KIAA1714 569 DK 570 PF00008.17.fs: domain 1 of 3, from 599 to 631: score 30.9, E = 9.3e-08 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C p +C +gG+C +++++++C+C +ytG++C KIAA1714 599 CLPS--YCEHGGECSQSWDTFSCDCLGT---GYTGETC 631 PF00008.17.ls: domain 1 of 2, from 599 to 631: score 32.8, E = 1.1e-06 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C p +C +gG+C +++++++C+C +ytG++C KIAA1714 599 CLPS--YCEHGGECSQSWDTFSCDCLGT---GYTGETC 631 PF00054.13.ls: domain 3 of 3, from 869 to 991: score 62.7, E = 1.1e-15 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvd.Grlevsyd F+Tt +sG+ + ++ ++ DF+ +eL+ + ++ +s+d KIAA1714 869 FKTTVSSGVFM-----ENLGIT-------DFIRIELHApTEVTFSFD 903 lGsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLg +G+g +++v s+++ +nD++WH+v +ern + ++L+Vd KIAA1714 904 VGNG-PCEVTVQSPTP-FNDNQWHHVRAERNVKGASLQVDQLPQ------ 945 GsvvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkG ++p +a++ + L ++ +L++GG + +++f G KIAA1714 946 -----KMQPAPADG-HVRLQLNSQLFIGGTA-----------TRQRGFLG 978 Cirdviingkpld<-* Cir++ +ng+ ld KIAA1714 979 CIRSLQLNGVALD 991 PF00054.13.fs: domain 3 of 4, from 869 to 991: score 60.9, E = 4e-17 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvd.Grlevsyd F+Tt +sG+ + ++ ++ DF+ +eL+ + ++ +s+d KIAA1714 869 FKTTVSSGVFM-----ENLGIT-------DFIRIELHApTEVTFSFD 903 lGsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLg +G+g +++v s+++ +nD++WH+v +ern + ++L+Vd KIAA1714 904 VGNG-PCEVTVQSPTP-FNDNQWHHVRAERNVKGASLQVDQLPQ------ 945 GsvvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkG ++p +a++ + L ++ +L++GG + +++f G KIAA1714 946 -----KMQPAPADG-HVRLQLNSQLFIGGTA-----------TRQRGFLG 978 Cirdviingkpld<-* Cir++ +ng+ ld KIAA1714 979 CIRSLQLNGVALD 991 PF02210.14.ls: domain 3 of 3, from 869 to 988: score 116.3, E = 8.1e-32 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGr.lvlryd F+T t ++G+ + + g+++ f+ +eL+ +++ +++d KIAA1714 869 FKT-TVSSGVFMENLGItD-----------FIRIELHAPTeVTFSFD 903 lG.sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgs G+++ +v++ s++p+nD+qWH+V++ern + ++L+VD+ ++ +++p + KIAA1714 904 VGnGPCeVTVQSPtPFNDNQWHHVRAERNVKGASLQVDQLpQKmQpAPAD 953 sdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri + l+ln++l++GG ++gF GCir++++ KIAA1714 954 GHV-RLQLNSQLFIGGTATR-----------------QrGFLGCIRSLQL 985 nge<-* ng+ KIAA1714 986 NGV 988 PF02210.14.fs: domain 3 of 4, from 869 to 988: score 114.5, E = 4.6e-33 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGr.lvlryd F+T t ++G+ + + g+++ f+ +eL+ +++ +++d KIAA1714 869 FKT-TVSSGVFMENLGItD-----------FIRIELHAPTeVTFSFD 903 lG.sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgs G+++ +v++ s++p+nD+qWH+V++ern + ++L+VD+ ++ +++p + KIAA1714 904 VGnGPCeVTVQSPtPFNDNQWHHVRAERNVKGASLQVDQLpQKmQpAPAD 953 sdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri + l+ln++l++GG ++gF GCir++++ KIAA1714 954 GHV-RLQLNSQLFIGGTATR-----------------QrGFLGCIRSLQL 985 nge<-* ng+ KIAA1714 986 NGV 988 PF00008.17.ls: domain 2 of 2, from 1010 to 1044: score 21.3, E = 0.0032 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* Cs + C ngG+C++ + g tC+C+ +y+G++C KIAA1714 1010 CSTYGHLCRNGGRCREKRRGVTCDCAFS---AYDGPFC 1044 PF02210.14.fs: domain 4 of 4, from 1094 to 1167: score 44.7, E = 1.1e-12 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLv.dGrlvlryd FRT t+ lLly+++ + +l++ L ++G l++ry+ KIAA1714 1094 FRT-TRTPSLLLYVSSFyE---------E-YLSVILAnNGSLQIRYK 1129 lG..sgg.vlltsg.plnDGqWHtVsverngrsvtLsV<-* l ++ +++ +++ ++++DGq H+V++ r++ v ++V KIAA1714 1130 LDrhQNPdAFTFDFkNMADGQLHQVKINREEAVVMVEV 1167 //