hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10383112/chunk_1/iprscan-20080502-10383112.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1714 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00282 298.7 4.4e-85 3 SM00231 96.8 2.6e-24 1 SM00181 32.5 5.8e-05 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00231 1/1 78 225 .. 1 199 [] 96.8 2.6e-24 SM00282 1/3 252 389 .. 1 137 [] 90.7 1.7e-22 SM00282 2/3 438 570 .. 1 137 [] 87.9 1.2e-21 SM00181 1/2 598 632 .. 1 32 [] 21.4 0.13 SM00282 3/3 861 988 .. 1 137 [] 120.0 2.6e-31 SM00181 2/2 1009 1045 .. 1 32 [] 11.1 27 Alignments of top-scoring domains: SM00231: domain 1 of 1, from 78 to 225: score 96.8, E = 2.6e-24 *->eCneplGleggeiadsqitassstgaarelgllgwaakiaRlngngl +C+ pl ++++ + +sss+ + + +g + Rln+ KIAA1714 78 DCDAPLAS---ALPR-SSFSSSSELSSS----HGPGF--SRLNR--- 111 nedygdgaWcpaknsledgifdtddphwilvDLgrklrtvtgv.TitGrr ++g+g+W+p s+ +++w+++DLg+ + vt+v T++G KIAA1714 112 --RDGAGGWTPL-VSN--------KYQWLQIDLGER-MEVTAVaTQGG-- 147 rrgdgngngdwvtyyvvaykddrrdllerlnGetWttykdfdiengtges +g+ dwvt y+++++d++r +W y++ e+ KIAA1714 148 -----YGSSDWVTSYLLMFSDGGR---------NWKQYRR--------EE 175 kv..FggNadagtvvlndfppPivARYvRilPtaentratgwhngiilRl + +F+gN +a+ vv+ + pP+ AR+ R+lP+a+n ++++i++R+ KIAA1714 176 SIwgFPGNTNADSVVHYRLQPPFEARFLRFLPLAWN-----PRGRIGMRI 220 ELlGC<-* E++GC KIAA1714 221 EVYGC 225 SM00282: domain 1 of 3, from 252 to 389: score 90.7, E = 1.7e-22 *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr + is+ F+ ++nG+Ll+ +++g +++leL+ G+lv+ KIAA1714 252 IrDVISLKFKAMQSNGILLHREgqHGNHITLELI------KGKLVFF 292 ydlGsst...tggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg ++ G+ ++t p++lt + l+D +WH+V +e +++v+ +VD+ KIAA1714 293 LNSGNAKlpsTIAPVTLTLG----SLLDDQHWHSVLIELLDTQVNFTVDK 338 ..gnpvsges.t.LdldkeesgplylGGlPe.....lpvspgFrGCirnl ++ + + ++ Ldl+ + +GG+P +++++ +++F+GC++nl KIAA1714 339 htHHFQAKGDsSyLDLN----FEISFGGIPTpgrsrAFRRKSFHGCLENL 384 rvngk<-* ++ng+ KIAA1714 385 YYNGV 389 SM00282: domain 2 of 3, from 438 to 570: score 87.9, E = 1.2e-21 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl ++ s++f+FrT+ G Ll+ ++g+ + l+L+ dG+l+l KIAA1714 438 DkVSVTFQFRTWNRAGHLLFGElrrGSGSFVLFLK------DGKLKL 478 rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggn ++ + ++p +t++ lnDGqWH+Vs++ + ++++++VD + KIAA1714 479 SLFQPG---QSPRNVTAG----AGLNDGQWHSVSFSAKWSHMNVVVD-DD 520 pvsges..t.LdldkeesgplylGGlPe.......lpvspgFrGCirnlr ++++ +d+ + +y+GG +++++++ + gF+GC+r ++ KIAA1714 521 TAVQPLvaVlIDSG----DTYYFGGCLDnssgsgcKSPLGGFQGCLRLIT 566 vngk<-* + k KIAA1714 567 IGDK 570 SM00181: domain 1 of 2, from 598 to 632: score 21.4, E = 0.13 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* C+++ C++G G+C + ++++C+C g Gytg++C KIAA1714 598 RCLpsYCEHG-----GECSqswdTFSCdCLGTGYTGeTCH 632 SM00282: domain 3 of 3, from 861 to 988: score 120.0, E = 2.6e-31 *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry + ++ f F+Tt ++G+ + + + +df+ +eL+ ++ +++++ KIAA1714 861 LtADVCFFFKTTVSSGVFMENLgITDFIRIELH--APTE---VTFSF 902 dlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnpv d G+ gp ++t++s ptp+nD+qWH+V++ern + ++L+VD ++p+ KIAA1714 903 DVGN----GPCEVTVQS--PTPFNDNQWHHVRAERNVKGASLQVD-QLPQ 945 sges......t.LdldkeesgplylGGlPelpvspgFrGCirnlrvngk< + + +++ +L+l+ ++l++GG+ + + gF GCir+l++ng+ KIAA1714 946 KMQPapadghVrLQLN----SQLFIGGTA--TRQRGFLGCIRSLQLNGV 988 -* KIAA1714 - - SM00181: domain 2 of 2, from 1009 to 1045: score 11.1, E = 27 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg..rCe<-* C++ ++ C nG G+C++++++ tC+C+ ++++ C KIAA1714 1009 HCStyghLCRNG-----GRCRekrrGVTCdCA-FSAYDgpFCS 1045 //