HUGE

Gene/Protein Characteristic Table for KIAA1718

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05558
Accession No. :	AB051505
Description :	JmjC domain-containing histone demethylation protein 1D.
HUGO Gene Name :	jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae) (JHDM1D)
Clone Name :	pf00323 [Vector Info]
Source :	Human brain (hippocampus)

Features of the cloned DNA sequence	Description

Length: 7480 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 6345 bp

Genome contig ID gi89161213r_139331017
PolyA signal sequence
(AAGAAA,-27)
+----*----+----*----+----*----+----
GTCCTTGAAAGAAAAAGAATCTGAATTCTATATCC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AATTCTGACTTTGTTCCCTTTTTCTGCTGATTGAATCATGGGAAATTATT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 7 r 139431017 139446239 8 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 377 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW83941	1e-137	99.7	hCG16420, isofo...	Homo sapiens
EAW83942	1.1e-137	99.7	hCG16420, isofo...	Homo sapiens
Q6ZMT4	1.2e-137	99.7	JmjC domain-con...	Homo sapiens
XP_001109325	2.6e-131	95.8	similar to PHD ...	Macaca mulatta
XP_001496558	8.9e-124	90.5	jumonji C domai...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TACCTATGCAAGACCTGTGAC

Primer_r
: TCTTGGAGGAAAACAGCTGAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 7

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	6345 bp
Genome contig ID	gi89161213r_139331017
PolyA signal sequence (AAGAAA,-27)	+--------+--------+----*----+---- GTCCTTGAAAGAAAAAGAATCTGAATTCTATATCC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AATTCTGACTTTGTTCCCTTTTTCTGCTGATTGAATCATGGGAAATTATT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	7	r	139431017	139446239	8	99.1	Perfect prediction

Primer_f	: TACCTATGCAAGACCTGTGAC
Primer_r	: TCTTGGAGGAAAACAGCTGAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1718

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information