hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10534741/chunk_1/iprscan-20080502-10534741.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1722 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00620.17.fs RhoGAP domain 237.9 6.9e-70 1 PF00620.17.ls RhoGAP domain 239.8 5.3e-69 1 PF01846.10.ls FF domain 52.1 1.7e-12 2 PF01846.10.fs FF domain 49.7 8.8e-12 3 PF00071.12.fs Ras family 20.5 7.2e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00071.12.fs 1/1 212 249 .. 137 174 .] 20.5 7.2e-06 PF01846.10.ls 2/2 487 547 .. 1 64 [] 38.3 2.5e-08 PF01846.10.fs 3/3 487 547 .. 1 64 [] 36.3 3.1e-08 PF00620.17.ls 1/1 1262 1413 .. 1 155 [] 239.8 5.3e-69 PF00620.17.fs 1/1 1262 1413 .. 1 155 [] 237.9 6.9e-70 Alignments of top-scoring domains: PF00071.12.fs: domain 1 of 1, from 212 to 249: score 20.5, E = 7.2e-06 *->eGealAkelgAlpFmETSAKtneNVeeaFeelareilk<-* ++ +A ++++l+ +ETSA++n+NV+ aF +l++ i k KIAA1722 212 DAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLIDK 249 PF01846.10.ls: domain 2 of 2, from 487 to 547: score 38.3, E = 2.5e-08 *->kakeaFreLLkehkvityak.klliktsnstWseakkklseDpryia kake+F+eLL e + y + l +k+s ++ ++++l e+ r++a KIAA1722 487 KAKEEFQELLLEYSELFY-ElELDAKPSKEKMGVIQDVLGEEQRFKA 532 ldsesylksereqlFedy<-* l+++ er l+ ++ KIAA1722 533 LQKLQ---AERDALILKH 547 PF01846.10.fs: domain 3 of 3, from 487 to 547: score 36.3, E = 3.1e-08 *->kakeaFreLLkehkvityak.klliktsnstWseakkklseDpryia kake+F+eLL e + y + l +k+s ++ ++++l e+ r++a KIAA1722 487 KAKEEFQELLLEYSELFY-ElELDAKPSKEKMGVIQDVLGEEQRFKA 532 ldsesylksereqlFedy<-* l+++ er l+ ++ KIAA1722 533 LQKLQ---AERDALILKH 547 PF00620.17.ls: domain 1 of 1, from 1262 to 1413: score 239.8, E = 5.3e-69 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln P+++e+Cie++e+ GL tEGIyRvsG+ks+++ L+ +fd+++ dl KIAA1722 1262 PIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDL- 1307 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea +++++v++vA++ K F+ eLP+PL+++ + +++e a k++d+e++l+a KIAA1722 1308 AEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVE-AHKINDREQKLHA 1356 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr l+e+l+k+P++N+++++y + hLn+V+ n +vN+Mt++NL+i+F+PtL+r KIAA1722 1357 LKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMR 1406 ppdgdsad<-* p+ + +d KIAA1722 1407 PDFS-TMD 1413 PF00620.17.fs: domain 1 of 1, from 1262 to 1413: score 237.9, E = 6.9e-70 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln P+++e+Cie++e+ GL tEGIyRvsG+ks+++ L+ +fd+++ dl KIAA1722 1262 PIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDL- 1307 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea +++++v++vA++ K F+ eLP+PL+++ + +++e a k++d+e++l+a KIAA1722 1308 AEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVE-AHKINDREQKLHA 1356 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr l+e+l+k+P++N+++++y + hLn+V+ n +vN+Mt++NL+i+F+PtL+r KIAA1722 1357 LKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMR 1406 ppdgdsad<-* p+ + +d KIAA1722 1407 PDFS-TMD 1413 //