hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11041984/chunk_1/iprscan-20080502-11041984.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1728 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00023.20.ls Ankyrin repeat 224.6 2e-64 11 PF00023.20.fs Ankyrin repeat 217.8 2.2e-62 11 PF07719.7.ls Tetratricopeptide repeat 60.6 4.8e-15 3 PF07719.7.fs Tetratricopeptide repeat 54.6 2.9e-14 3 PF00515.18.fs Tetratricopeptide repeat 37.7 1e-09 3 PF00515.18.ls Tetratricopeptide repeat 41.8 2.2e-09 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.ls 1/11 679 714 .. 1 33 [] 7.7 2.2 PF00023.20.fs 1/11 685 714 .. 8 33 .] 9.8 0.095 PF00023.20.ls 2/11 717 749 .. 1 33 [] 4.8 5.9 PF00023.20.fs 2/11 726 749 .. 10 33 .] 8.3 0.24 PF00023.20.fs 3/11 750 782 .. 1 33 [] 25.6 3.8e-06 PF00023.20.ls 3/11 750 782 .. 1 33 [] 27.6 4.2e-05 PF00023.20.ls 4/11 783 815 .. 1 33 [] 1.2 19 PF00023.20.fs 4/11 783 806 .. 1 24 [. 3.4 5.9 PF00023.20.ls 5/11 823 859 .. 1 33 [] 5.6 4.5 PF00023.20.fs 5/11 827 859 .. 5 33 .] 5.0 2.1 PF00023.20.ls 6/11 861 893 .. 1 33 [] 29.3 1.3e-05 PF00023.20.fs 6/11 861 893 .. 1 33 [] 27.3 1.3e-06 PF00023.20.ls 7/11 894 926 .. 1 33 [] 34.3 3.8e-07 PF00023.20.fs 7/11 894 926 .. 1 33 [] 32.4 4.9e-08 PF00023.20.ls 8/11 927 959 .. 1 33 [] 39.7 9e-09 PF00023.20.fs 8/11 927 959 .. 1 33 [] 37.8 1.5e-09 PF00023.20.ls 9/11 960 992 .. 1 33 [] 29.3 1.3e-05 PF00023.20.fs 9/11 960 992 .. 1 33 [] 27.3 1.3e-06 PF00023.20.ls 10/11 993 1025 .. 1 33 [] 33.1 9e-07 PF00023.20.fs 10/11 993 1025 .. 1 33 [] 31.1 1.1e-07 PF00023.20.ls 11/11 1026 1058 .. 1 33 [] 12.0 0.54 PF00023.20.fs 11/11 1026 1058 .. 1 33 [] 10.0 0.085 PF00515.18.ls 2/3 1119 1152 .. 1 34 [] 16.3 0.056 PF00515.18.fs 2/3 1119 1152 .. 1 34 [] 14.3 0.0045 PF00515.18.fs 3/3 1153 1186 .. 1 34 [] 23.1 1.4e-05 PF00515.18.ls 3/3 1153 1186 .. 1 34 [] 25.1 0.00023 PF07719.7.ls 3/3 1153 1186 .. 1 34 [] 25.4 0.00019 Alignments of top-scoring domains: PF00023.20.ls: domain 1 of 11, from 679 to 714: score 7.7, E = 2.2 *->dGfTPLHlAalrg....nlevvklLlsqGAdlnaqdd<-* +G ++ lA+lr+ +n++v +lL+ GA++n ++ KIAA1728 679 EGLSA-ALASLRNlytpNVKVSRLLILGGANVNYRTE 714 PF00023.20.fs: domain 1 of 11, from 685 to 714: score 9.8, E = 0.095 *->lAalrg....nlevvklLlsqGAdlnaqdd<-* lA+lr+ +n++v +lL+ GA++n ++ KIAA1728 685 LASLRNlytpNVKVSRLLILGGANVNYRTE 714 PF00023.20.ls: domain 2 of 11, from 717 to 749: score 4.8, E = 5.9 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + L + ++ g++evv+lLl+ GA+l+ + KIAA1728 717 NNAPILCVQSHLGHEEVVTLLLEFGACLDGTSE 749 PF00023.20.fs: domain 2 of 11, from 726 to 749: score 8.3, E = 0.24 *->alrgnlevvklLlsqGAdlnaqdd<-* ++ g++evv+lLl+ GA+l+ + KIAA1728 726 SHLGHEEVVTLLLEFGACLDGTSE 749 PF00023.20.fs: domain 3 of 11, from 750 to 782: score 25.6, E = 3.8e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+T+L +Aa g++++v lL ++G +++ d+ KIAA1728 750 NGMTALCYAAAAGHMKLVCLLTKKGVRVDHLDK 782 PF00023.20.ls: domain 3 of 11, from 750 to 782: score 27.6, E = 4.2e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+T+L +Aa g++++v lL ++G +++ d+ KIAA1728 750 NGMTALCYAAAAGHMKLVCLLTKKGVRVDHLDK 782 PF00023.20.ls: domain 4 of 11, from 783 to 815: score 1.2, E = 19 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ +L + alrg+ +++++Ll + ++ KIAA1728 783 KGQCALVHSALRGHGDILQYLLTCEWSPGPPQP 815 PF00023.20.fs: domain 4 of 11, from 783 to 806: score 3.4, E = 5.9 *->dGfTPLHlAalrgnlevvklLlsq<-* G+ +L + alrg+ +++++Ll + KIAA1728 783 KGQCALVHSALRGHGDILQYLLTC 806 PF00023.20.ls: domain 5 of 11, from 823 to 859: score 5.6, E = 4.5 *->dGfTPLHlAalrgnlevvklLls....qGAdlnaqdd<-* + +L Aa++g+ +vv++Ll+ ++++ ++n +d KIAA1728 823 ALQQALTAAASMGHSSVVQCLLGmekeHEVEVNGTDT 859 PF00023.20.fs: domain 5 of 11, from 827 to 859: score 5.0, E = 2.1 *->PLHlAalrgnlevvklLls....qGAdlnaqdd<-* +L Aa++g+ +vv++Ll+ ++++ ++n +d KIAA1728 827 ALTAAASMGHSSVVQCLLGmekeHEVEVNGTDT 859 PF00023.20.ls: domain 6 of 11, from 861 to 893: score 29.3, E = 1.3e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L Aa rg lev++lLl++GA + +++ KIAA1728 861 WGETALTAAAGRGKLEVCELLLGHGAAVSRTNR 893 PF00023.20.fs: domain 6 of 11, from 861 to 893: score 27.3, E = 1.3e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L Aa rg lev++lLl++GA + +++ KIAA1728 861 WGETALTAAAGRGKLEVCELLLGHGAAVSRTNR 893 PF00023.20.ls: domain 7 of 11, from 894 to 926: score 34.3, E = 3.8e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G PL +Aa+ g+ ++v+lLl++G+d+n+ d+ KIAA1728 894 RGVPPLFCAARQGHWQIVRLLLERGCDVNLSDK 926 PF00023.20.fs: domain 7 of 11, from 894 to 926: score 32.4, E = 4.9e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G PL +Aa+ g+ ++v+lLl++G+d+n+ d+ KIAA1728 894 RGVPPLFCAARQGHWQIVRLLLERGCDVNLSDK 926 PF00023.20.ls: domain 8 of 11, from 927 to 959: score 39.7, E = 9e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPL++Aa+ g+l+ v++Lls+GA l d+ KIAA1728 927 QGRTPLMVAACEGHLSTVEFLLSKGAALSSLDK 959 PF00023.20.fs: domain 8 of 11, from 927 to 959: score 37.8, E = 1.5e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPL++Aa+ g+l+ v++Lls+GA l d+ KIAA1728 927 QGRTPLMVAACEGHLSTVEFLLSKGAALSSLDK 959 PF00023.20.ls: domain 9 of 11, from 960 to 992: score 29.3, E = 1.3e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G ++L +A+l+g+ vv++L++ GA ++ +d+ KIAA1728 960 EGLSALSWACLKGHRAVVQYLVEEGAAIDQTDK 992 PF00023.20.fs: domain 9 of 11, from 960 to 992: score 27.3, E = 1.3e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G ++L +A+l+g+ vv++L++ GA ++ +d+ KIAA1728 960 EGLSALSWACLKGHRAVVQYLVEEGAAIDQTDK 992 PF00023.20.ls: domain 10 of 11, from 993 to 1025: score 33.1, E = 9e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPL lAa++g++e v +L+++GA + ++d KIAA1728 993 NGRTPLDLAAFYGDAETVLYLVEKGAVIEHVDH 1025 PF00023.20.fs: domain 10 of 11, from 993 to 1025: score 31.1, E = 1.1e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPL lAa++g++e v +L+++GA + ++d KIAA1728 993 NGRTPLDLAAFYGDAETVLYLVEKGAVIEHVDH 1025 PF00023.20.ls: domain 11 of 11, from 1026 to 1058: score 12.0, E = 0.54 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ PL A+ + n++vv Ll +GA l KIAA1728 1026 SGMRPLDRAIGCRNTSVVVALLRKGAKLGNAAW 1058 PF00023.20.fs: domain 11 of 11, from 1026 to 1058: score 10.0, E = 0.085 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ PL A+ + n++vv Ll +GA l KIAA1728 1026 SGMRPLDRAIGCRNTSVVVALLRKGAKLGNAAW 1058 PF00515.18.ls: domain 2 of 3, from 1119 to 1152: score 16.3, E = 0.056 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + y nl + +k +++ A+e+ kALel P+ KIAA1728 1119 VSLYLNLSRCRRKTNDFGMAEEFASKALELKPKS 1152 PF00515.18.fs: domain 2 of 3, from 1119 to 1152: score 14.3, E = 0.0045 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + y nl + +k +++ A+e+ kALel P+ KIAA1728 1119 VSLYLNLSRCRRKTNDFGMAEEFASKALELKPKS 1152 PF00515.18.fs: domain 3 of 3, from 1153 to 1186: score 23.1, E = 1.4e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +ea+y ++ a ++ ++ +A++++++A++l P+n KIAA1728 1153 YEAFYARARAKRNSRQFVAALADLQEAVKLCPTN 1186 PF00515.18.ls: domain 3 of 3, from 1153 to 1186: score 25.1, E = 0.00023 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +ea+y ++ a ++ ++ +A++++++A++l P+n KIAA1728 1153 YEAFYARARAKRNSRQFVAALADLQEAVKLCPTN 1186 PF07719.7.ls: domain 3 of 3, from 1153 to 1186: score 25.4, E = 0.00019 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ea y++++a ++ +++ Al+++++A++l P+n KIAA1728 1153 YEAFYARARAKRNSRQFVAALADLQEAVKLCPTN 1186 //