hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11125469/chunk_1/iprscan-20080502-11125469.nocrc
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Query sequence: KIAA1733
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02755.6.fs RPEL repeat                                     97.7    1.3e-29   3
PF02755.6.ls RPEL repeat                                     99.4    9.9e-27   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02755.6.fs   1/3     163   186 ..     1    24 [.    31.4  7.6e-09
PF02755.6.ls   1/3     163   188 ..     1    26 []    33.9  5.3e-07
PF02755.6.fs   2/3     447   472 ..     1    26 []    31.8  5.6e-09
PF02755.6.ls   2/3     447   472 ..     1    26 []    33.8  5.5e-07
PF02755.6.fs   3/3     485   509 .]     1    25 [.    34.5  8.4e-10
PF02755.6.ls   3/3     485   509 .]     1    26 []    31.7  2.3e-06

Alignments of top-scoring domains:
PF02755.6.fs: domain 1 of 3, from 163 to 186: score 31.4, E = 7.6e-09
                   *->dlLarKLSqRPtreELerrnILke<-*
                      + L+rK+S R++reEL++r++Lke   
    KIAA1733   163    AALERKISMRQSREELIKRGVLKE    186  

PF02755.6.ls: domain 1 of 3, from 163 to 188: score 33.9, E = 5.3e-07
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                      + L+rK+S R++reEL++r++Lke     
    KIAA1733   163    AALERKISMRQSREELIKRGVLKEIY    188  

PF02755.6.fs: domain 2 of 3, from 447 to 472: score 31.8, E = 5.6e-09
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                      d La+KLS+RP++ ELe++nIL +     
    KIAA1733   447    DSLAIKLSNRPSKRELEEKNILPRQT    472  

PF02755.6.ls: domain 2 of 3, from 447 to 472: score 33.8, E = 5.5e-07
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                      d La+KLS+RP++ ELe++nIL +     
    KIAA1733   447    DSLAIKLSNRPSKRELEEKNILPRQT    472  

PF02755.6.fs: domain 3 of 3, from 485 to 509: score 34.5, E = 8.4e-10
                   *->dlLarKLSqRPtreELerrnILkee<-*
                      ++L r+LSqRPt eELe+rnILk++   
    KIAA1733   485    TKLTRRLSQRPTAEELEQRNILKRK    509  

PF02755.6.ls: domain 3 of 3, from 485 to 509: score 31.7, E = 2.3e-06
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                      ++L r+LSqRPt eELe+rnILk++    
    KIAA1733   485    TKLTRRLSQRPTAEELEQRNILKRK-    509  

//