# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ph00321.fasta.huge -Q ../query/KIAA1733.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1733, 509 aa vs ./tmplib.25089 library 1986996 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.8758+/-0.00755; mu= 8.6186+/- 0.512 mean_var=199.4668+/-47.866, 0's: 0 Z-trim: 1 B-trim: 150 in 1/39 Lambda= 0.090811 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0680 ( 635 res) hk02746 ( 635) 406 65.4 1.4e-11 >>KIAA0680 ( 635 res) hk02746 (635 aa) initn: 620 init1: 371 opt: 406 Z-score: 299.9 bits: 65.4 E(): 1.4e-11 Smith-Waterman score: 601; 31.911% identity (54.731% similar) in 539 aa overlap (108-509:5-540) 80 90 100 110 120 130 KIAA17 DDIDRRPIRRVRSKSDTPYLAEARISFNLGAAEEVERLAAMRSDSLVPGTHTPPIRRRSK :.. ... . ::. . :..:::..:..: KIAA06 DMDNAVDGLDKASIANSDGPTAGSQTPPFKRKGK 10 20 30 140 150 160 170 180 190 KIAA17 FANLGRIFKPWKWRKKK-SEKFKHTSAALERKISMRQSREELIKRGVLKEIYDKDGELSI ....:.::::::::::: :.::..:::.:::::: ::::::::.::::::. :.::.... KIAA06 LSTIGKIFKPWKWRKKKTSDKFRETSAVLERKISTRQSREELIRRGVLKELPDQDGDVTV 40 50 60 70 80 90 200 210 220 230 240 KIAA17 SNE----------EDSLENGQSLSSSQLSLPALSEMEPVPMPR--DPCSYEVLQPSDIMD . : :.: .. ... .:. . ..:: : :. . . . .. . :. KIAA06 NFENSNGHMIPIGEESTRE-ENVVKSEEGNGSVSEKTP-PLEEQAEDKKENTENHSETPA 100 110 120 130 140 150 250 260 270 280 290 KIAA17 GP--DPGAPVKLPCLPVKLSPPLPPKKVMICMPVGGPDLSLVSYTAQKSGQQGV------ .: :.:: : : . :.::: . : .. .. ... :.:. KIAA06 APALPPSAPPKPRSKPKPKKSPVPPKGATAGASHKGDEVPPIKKNTKAPGKQAPVPPPKP 160 170 180 190 200 210 300 310 320 330 KIAA17 AQHHHTVLPSQIQHQLQY-GSHGQHLPST--TGSLPMHPS--------------GCRMID :... : . .:. . ::... ::: :.: : . : : : KIAA06 ASRNTTREAAGSSHSKKTTGSKASASPSTSSTSSRPKASKETVSSKAGTVGTTKGKRKTD 220 230 240 250 260 270 340 350 360 370 KIAA17 ELNKTLAMTMQ----------------RLESS--EQRVPCSTSYHSSGLHS---GDGVTK . : .. . :.:: :: :: . ... ..: :. KIAA06 KQPITSHLSSDTTTSGTSDLKGEPAETRVESFKLEQTVPGAEEQNTGKFKSMVPPPPVAP 280 290 300 310 320 330 380 390 400 KIAA17 A-GPMG--LPEIRQ------VPTVVI-------------------ECDDNKENVPHES-- : .:.. :: : .:.:.. : :. .. . KIAA06 APSPLAPPLPLEDQCITASDTPVVLVSVGADLPVSALDPSQLLWAEEPTNRTTLYSGTGL 340 350 360 370 380 390 410 420 KIAA17 --DYEDSSCLYTREE--------------------------------------------- . :...:. :.:: KIAA06 SVNRENAKCFTTKEELGKTVPQLLTPGLMGESSESFSASEDEGHREYQANDSDSDGPILY 400 410 420 430 440 450 430 440 450 460 470 480 KIAA17 -EEEEEDEDDDSSLYTSSLAMKVCRKDSLAIKLSNRPSKRELEEKNILPRQTDEERLELR ..:.::::.:.: :.:: :. :.:.:::::.:::::.:::.:::: : ..::: :.: KIAA06 TDDEDEDEDEDGS-GESALASKIRRRDTLAIKLGNRPSKKELEDKNILQRTSEEERQEIR 460 470 480 490 500 510 490 500 KIAA17 QQIGTKLTRRLSQRPTAEELEQRNILKRK :::::::.::::::::.::::::::::.: KIAA06 QQIGTKLVRRLSQRPTTEELEQRNILKQKNEEEEQEAKMELKRRLSRKLSLRPTVAELQA 520 530 540 550 560 570 509 residues in 1 query sequences 1986996 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:14:47 2008 done: Thu Dec 18 15:14:47 2008 Total Scan time: 0.470 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]