hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11230180/chunk_1/iprscan-20080502-11230180.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1739 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00630 663.1 8.4e-195 1 SM00423 45.8 5.5e-09 1 SM00409 31.0 0.00017 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00630 1/1 183 611 .. 1 532 [] 663.1 8.4e-195 SM00423 1/1 629 681 .. 1 56 [] 45.8 5.5e-09 SM00409 1/1 692 776 .. 1 58 [] 31.0 0.00017 Alignments of top-scoring domains: SM00630: domain 1 of 1, from 183 to 611: score 663.1, E = 8.4e-195 *->fnhllldedsgierlyVGArNriysLslpnlsllsevvtgpvldwps f +l l e +g lyVGAr++++++s++ l+l + +++w++ KIAA1739 183 FLTLTLTEPTG--LLYVGAREALFAFSMEALEL------QGAISWEA 221 ceepnekclkceeCaakgkeeCssneteCdNyirvLlvdndhiadthLyv + e k++eC++kgk +n+teC+N+ir+L+++n+ +hLyv KIAA1739 222 PVE------KKTECIQKGK----NNQTECFNFIRFLQPYNA----SHLYV 257 CGTnafgPdVtCrlinlgdlepadeseaedqiltlclyskevnlsesgrg CGT af+P +C++ n+ + +tl+++ ++e+g+g KIAA1739 258 CGTYAFQP--KCTYVNMLT-------------FTLEHG-----EFEDGKG 287 kCPydPlgsstsvvvdggvPgggeLYsgtsadfsgvalsysssdpiifRs kCPydP+ ++++vdg eLYs+t ++f+g ++pii+R+ KIAA1739 288 KCPYDPAKGHAGLLVDG------ELYSATLNNFLG-------TEPIILRN 324 lgttqdgfefefhslrttiydskwgydlnepnFVyaFeipes.g....dg +g h++++t+y +w lnep+FV+++++pes g+ ++d+ KIAA1739 325 MG---------PHHSMKTEYLAFW---LNEPHFVGSAYVPESvGsftgDD 362 dfVYFFFrEtaveainrdcssekavvsRVARvCknDvGGqrlLqkkWtSF d+VYFFFrE+ave+ ++++ +vv+RVARvCk+D+GG r+Lq kWt+F KIAA1739 363 DKVYFFFRERAVES----DCYAEQVVARVARVCKGDMGGARTLQRKWTTF 408 LKarLnCsvpgkggvrefyFneLQavfllppGaLArelgiesddvlYgVF LKarL Cs p++ yFn+LQa++ l++ +++ ++ ++gVF KIAA1739 409 LKARLACSAPNWQL----YFNQLQAMHTLQD----TSWH---NTTFFGVF 447 sqgqqtssrdaanpipgSAVCaFslkdInavFneGpfkcyegpnsawlpv +q++ ++ A+C ++l +I++vF+ Gp+k+y+ + ++w ++ KIAA1739 448 Q--AQWGD----MYLS--AICEYQLEEIQRVFE-GPYKEYHEEAQKWDRY 488 egnkvPyprPGtCisntfregrndssskdlPddvlnfikdhpLmdeavpP ++ +vP+prPG+Ci+n++r+ ++++ss+ lPd++lnf+k+hpLm+e v P KIAA1739 489 TD-PVPSPRPGSCINNWHRR-HGYTSSLELPDNILNFVKKHPLMEEQVGP 536 ltgrPllvktgtdyrlTsiaVdrvrgldGgkneytVlFlGTsdGrvlKvv ++rPllvk+ ++++T++++drv+gldG + ytVlF+GT dG++lK+v KIAA1739 537 RWSRPLLVKK--GTNFTHLVADRVTGLDGAT--YTVLFIGTGDGWLLKAV 582 vsrsssssssaglesvlleelqvfppgsepirdmvlsskk<-* + +g++++l+eelq+f+ ep r++vls++k KIAA1739 583 S---------LGPWVHLIEELQLFD-Q-EPMRSLVLSQSK 611 SM00423: domain 1 of 1, from 629 to 681: score 45.8, E = 5.5e-09 *->rCsqygvtsCseCllardpygCgWCssegrCtrg...erCderrgsr +C +y +sC++C+lardpy C+W ++++rC++ ++++ ++ KIAA1739 629 DCMKY--RSCADCVLARDPY-CAWSVNTSRCVAVgghSGSL----LI 668 qnwssg.pssqCp<-* q+++ ++s C KIAA1739 669 QHVMTSdTSGICN 681 SM00409: domain 1 of 1, from 692 to 776: score 31.0, E = 0.00017 *->pp.vtvkeGesvtLtC.as....titWy................... p+++tv++G +++L+C+ s++ + +W+ ++++ + ++++ + + KIAA1739 692 PKnITVVAGTDLVLPChLSsnlaHARWTfggrdlpaeqpgsflydar 738 ...LtI.nvtpeDsesgGtYtCaat...sgsasseqgttLtVl<-* + L++ ++p ++ G Y C + ++ a g + V KIAA1739 739 lqaLVVmAAQPRHA---GAYHCFSEeqgARLAAE--GYLVAVV 776 //