HUGE

Gene/Protein Characteristic Table for KIAA1752

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05238
Accession No. :	AB051539
Description :	Protein fatso.
HUGO Gene Name :	fat mass and obesity associated (FTO)
Clone Name :	pj02555 [Vector Info]
Source :	Human brain (hippocampus)

Features of the cloned DNA sequence	Description

Length: 4060 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2536 bp

Genome contig ID gi51511732f_52195592
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
AAATATTCATATCCAATAAACATATTAAAAGGATG
Flanking genome sequence
(510276 - 510325)
----+----*----+----*----+----*----+----*----+----*
AGATAAGAAACCGAGAGATTTTGCTGTTTTTTTCCTTTTGCATGGATGAG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 16 f 52295592 52705866 9 99.3 Perfect prediction

Features of the protein sequence	Description

Length: 507 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q9C0B1	0	99.8	Protein fto; Fa...	Homo sapiens
BAG53322	0	99.6	unnamed protein...	Homo sapiens
XP_510968	0	99.4	fatso [Pan trog...	Pan troglodytes
Q5R7X0	0	98.4	Protein fto; Fa...	Pongo abelii
ACJ53748	6.1e-203	92.1	fat mass and ob...	Oryctolagus cun...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CACATTAAGCAAAGCAGCCAG

Primer_r
: ACTTTTAAACACCACGCCCTC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 16

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2536 bp
Genome contig ID	gi51511732f_52195592
PolyA signal sequence (AATAAA,-21)	+--------+--------+----*----+---- AAATATTCATATCCAATAAACATATTAAAAGGATG
Flanking genome sequence (510276 - 510325)	----+--------+--------+--------+--------+----* AGATAAGAAACCGAGAGATTTTGCTGTTTTTTTCCTTTTGCATGGATGAG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	16	f	52295592	52705866	9	99.3	Perfect prediction

Primer_f	: CACATTAAGCAAAGCAGCCAG
Primer_r	: ACTTTTAAACACCACGCCCTC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1752

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information