hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11470309/chunk_1/iprscan-20080502-11470309.nocrc
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Query sequence: KIAA1753
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00642.15.fs Zinc finger C-x8-C-x5-C-x3-H type (and simil    53.0    6.5e-17   5
PF00642.15.ls Zinc finger C-x8-C-x5-C-x3-H type (and simil    51.4    2.8e-12   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00642.15.ls   1/4      93   120 ..     1    27 []    11.9    0.032
PF00642.15.ls   2/4     133   161 ..     1    27 []     4.0     0.36
PF00642.15.ls   3/4     224   248 ..     1    27 []     6.2     0.19
PF00642.15.fs   5/5     302   328 ..     1    27 []    27.2  2.9e-08
PF00642.15.ls   4/4     302   328 ..     1    27 []    29.2  1.3e-05

Alignments of top-scoring domains:
PF00642.15.ls: domain 1 of 4, from 93 to 120: score 11.9, E = 0.032
                   *->yktelCrff.srtGtCkyGdrCkFaHge<-*
                         + C +++ +tG C+ Gd C+F H     
    KIAA1753    93    SPDVYCTKYdEATGLCPEGDECPFLHRT    120  

PF00642.15.ls: domain 2 of 4, from 133 to 161: score 4.0, E = 0.36
                   *->yktelCrffsrt...GtC.kyGdrCkFaHge<-*
                      ykt +C   ++t+++G C+k G  C FaHg+   
    KIAA1753   133    YKTGICI--HETdskGNCtKNGLHCAFAHGP    161  

PF00642.15.ls: domain 3 of 4, from 224 to 248: score 6.2, E = 0.19
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                      ykte+C+  +    C+ G +C++ H     
    KIAA1753   224    YKTEPCK--KPPRLCRQGYACPYYHNS    248  

PF00642.15.fs: domain 5 of 5, from 302 to 328: score 27.2, E = 2.9e-08
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                      yk   C++ +++G+C++G+ C FaH+e   
    KIAA1753   302    YKSTKCNDMQQSGSCPRGPFCAFAHVE    328  

PF00642.15.ls: domain 4 of 4, from 302 to 328: score 29.2, E = 1.3e-05
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                      yk   C++ +++G+C++G+ C FaH+e   
    KIAA1753   302    YKSTKCNDMQQSGSCPRGPFCAFAHVE    328  

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