hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12005170/chunk_1/iprscan-20080502-12005170.nocrc
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Query sequence: KIAA1761
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07923.4.ls N1221-like protein                             529.1   4.3e-156   1
PF07923.4.fs N1221-like protein                             527.4   1.4e-155   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07923.4.fs   1/1      50   363 ..     1   385 []   527.4 1.4e-155
PF07923.4.ls   1/1      50   363 ..     1   385 []   529.1 4.3e-156

Alignments of top-scoring domains:
PF07923.4.fs: domain 1 of 1, from 50 to 363: score 527.4, E = 1.4e-155
                   *->eaarlekrlsspassqpaldfeltdfdgleDELsEwFdytfWeylel
                      e++r+++++s+++s++p+l+fe++d+d++++ELsE+++yt  e +e+
    KIAA1761    50    EFNRNQRKDSEGYSESPDLEFEYADTDKWAAELSELYSYT--EGPEF 94   

                   gqnkkcFekLRkydqpslfsedenyqsldldqkRnfvlkLldeLevssrs
                    +n+kcFe+    d+++++++++ +++ld++q+R+++++Lld Lev++r+
    KIAA1761    95 LMNRKCFEE----DFRIHVTDKK-WTELDTNQHRTHAMRLLDGLEVTARE 139  

                   lrnkalrallYIAqGtfaevvkaaLPnfadhkvrtSieehlqsiRrNvll
                   +r+k++ra+lY+AqGtf+e+              +S++e+++++R+N++l
    KIAA1761   140 KRLKVARAILYVAQGTFGEC--------------SSEAEVQSWMRYNIFL 175  

                   LlelgllseivelFkkeiedgrisKAsaracRdsnlnlardteKWRTRQL
                   Lle+g+++++vel+++ei+++++   +++a+R+++++la++t+       
    KIAA1761   176 LLEVGTFNALVELLNMEIDNSAA---CSSAVRKPAISLADSTD------- 215  

                   PTmVDNElLrvlltiLYfitevildeRendeeevdDLetRkafiaelneP
                           Lrvll+i+Y+i+e++++e+e+d++e++  ++R++f+ael +P
    KIAA1761   216 --------LRVLLNIMYLIVETVHQECEGDKAEWR--TMRQTFRAELGSP 255  

                   veNgepLvefLtdmiekfrwgsDKrlhfpitqvGttfGiPGaanqhrmLm
                   ++N+ep++++L++m++kf++g+  ++hfp+                    
    KIAA1761   256 LYNNEPFAIMLFGMVTKFCSGH--APHFPM-------------------- 283  

                   kkvilLLfKvllLqfGgfEelsvlKeeKrsiagLhnikedsikveksmla
                   kkv+lLL+K++l+++GgfEel+++K+eKrsi+gL++++edsikv+++m+a
    KIAA1761   284 KKVLLLLWKTVLCTLGGFEELQSMKAEKRSILGLPPLPEDSIKVIRNMRA 333  

                   aSPldyeafReeitrApppsrFpsrgmpasklpldvDn<-*
                   aSP++++++++e++        ++rg++++k ++++Dn   
    KIAA1761   334 ASPPASASDLIEQQ--------QKRGRREHKALIKQDN    363  

PF07923.4.ls: domain 1 of 1, from 50 to 363: score 529.1, E = 4.3e-156
                   *->eaarlekrlsspassqpaldfeltdfdgleDELsEwFdytfWeylel
                      e++r+++++s+++s++p+l+fe++d+d++++ELsE+++yt  e +e+
    KIAA1761    50    EFNRNQRKDSEGYSESPDLEFEYADTDKWAAELSELYSYT--EGPEF 94   

                   gqnkkcFekLRkydqpslfsedenyqsldldqkRnfvlkLldeLevssrs
                    +n+kcFe+    d+++++++++ +++ld++q+R+++++Lld Lev++r+
    KIAA1761    95 LMNRKCFEE----DFRIHVTDKK-WTELDTNQHRTHAMRLLDGLEVTARE 139  

                   lrnkalrallYIAqGtfaevvkaaLPnfadhkvrtSieehlqsiRrNvll
                   +r+k++ra+lY+AqGtf+e+              +S++e+++++R+N++l
    KIAA1761   140 KRLKVARAILYVAQGTFGEC--------------SSEAEVQSWMRYNIFL 175  

                   LlelgllseivelFkkeiedgrisKAsaracRdsnlnlardteKWRTRQL
                   Lle+g+++++vel+++ei+++++   +++a+R+++++la++t+       
    KIAA1761   176 LLEVGTFNALVELLNMEIDNSAA---CSSAVRKPAISLADSTD------- 215  

                   PTmVDNElLrvlltiLYfitevildeRendeeevdDLetRkafiaelneP
                           Lrvll+i+Y+i+e++++e+e+d++e++  ++R++f+ael +P
    KIAA1761   216 --------LRVLLNIMYLIVETVHQECEGDKAEWR--TMRQTFRAELGSP 255  

                   veNgepLvefLtdmiekfrwgsDKrlhfpitqvGttfGiPGaanqhrmLm
                   ++N+ep++++L++m++kf++g+  ++hfp+                    
    KIAA1761   256 LYNNEPFAIMLFGMVTKFCSGH--APHFPM-------------------- 283  

                   kkvilLLfKvllLqfGgfEelsvlKeeKrsiagLhnikedsikveksmla
                   kkv+lLL+K++l+++GgfEel+++K+eKrsi+gL++++edsikv+++m+a
    KIAA1761   284 KKVLLLLWKTVLCTLGGFEELQSMKAEKRSILGLPPLPEDSIKVIRNMRA 333  

                   aSPldyeafReeitrApppsrFpsrgmpasklpldvDn<-*
                   aSP++++++++e++        ++rg++++k ++++Dn   
    KIAA1761   334 ASPPASASDLIEQQ--------QKRGRREHKALIKQDN    363  

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