hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12092417/chunk_1/iprscan-20080502-12092417.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1766
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00799                                                 263.8    1.4e-74   1
SM00801                                                  86.9    2.4e-21   1
SM00568                                                  58.0    1.2e-12   1
SM00800                                                  54.9      1e-11   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00800     1/1       1    57 [.     1   114 []    54.9    1e-11
SM00799     1/1      87   269 ..     1   204 []   263.8  1.4e-74
SM00801     1/1     322   391 ..     1    84 []    86.9  2.4e-21
SM00568     1/1     842   928 ..     1    80 []    58.0  1.2e-12

Alignments of top-scoring domains:
SM00800: domain 1 of 1, from 1 to 57: score 54.9, E = 1e-11
                   *->pgrLfdyfvvvgldkskglepdelsalyqleapgrtGefqplgrsyk
                                                                     
    KIAA1766     -    ----------------------------------------------- -    

                   PeildryPekdfedfplpdsvpmFCFPeGidietwprstsspdpqfFsFV
                        r+P+kd++d+p+p+++++FC+P G+++     s+++++p+fF+ V
    KIAA1766     1 -----RFPQKDWDDTPFPQGIELFCQPGGWQL-----SRERKQPTFFVVV 40   

                   LTdedGsrrYGfCrrfy<-*
                   LTd+d+ r+Y++C++fy   
    KIAA1766    41 LTDIDSDRHYCSCLTFY    57   

SM00799: domain 1 of 1, from 87 to 269: score 263.8, E = 1.4e-74
                   *->yapkcisCilSrlpffelFrkfLnelyrllasdsssellleellisl
                      +apk++ +++Srl ++e+Fr +L  +y++++  +s +++le+l+++l
    KIAA1766    87    FAPKSL-VLVSRLYYPEIFRACLGLIYTVYV--DSLNVSLESLIANL 130  

                   llspvPlPppggslvlsslsSyvslgppgdlvvpielqrPddselplide
                   + + vP  + ggs++l      +slg +gd++   ++q P++++lp ++ 
    KIAA1766   131 CACLVP--AAGGSQKL------FSLG-AGDRQ---LIQTPLHDSLPITG- 167  

                   nfdlheLfecLgvenvlqLfaslLlErrIifvSsnlstLsavieallaLL
                    +++++Lf++Lg++nvl+Lf+++L+E++++f+S ++++Ls++++al +L+
    KIAA1766   168 -TSVALLFQQLGIQNVLSLFCAVLTENKVLFHSASFQRLSDACRALESLM 216  

                   yPFvWQhvyIPiLPasLldvLsAPtPFiiGvhssffeevkeepdeeddvv
                   +P++++ +yIPiLPa+Ll+vLs+PtPFiiGvhs f ++v e++d    v+
    KIAA1766   217 FPLKYSYPYIPILPAQLLEVLSSPTPFIIGVHSVFKTDVHELLD----VI 262  

                   vVDLDtg<-*
                   + DLD g   
    KIAA1766   263 IADLDGG    269  

SM00801: domain 1 of 1, from 322 to 391: score 86.9, E = 2.4e-21
                   *->lndeireaaFlrffnsaqllggllYrnflrkhpitdaptwrkepgpv
                      l++e+r a+Flr+f  aql++g  Yr++l+         +r++ +pv
    KIAA1766   322    LDKEVR-AVFLRLF--AQLFQG--YRSCLQ--------LIRIHAEPV 355  

                   isFdkesFlksrpsselrpFlkkfletQmFsqFIeer<-*
                   i+F+k +Fl++r   e  +Fl+k+l  ++F++F+ er   
    KIAA1766   356 IHFHKTAFLGQRGLVE-NDFLTKVLSGMAFAGFVSER    391  

SM00568: domain 1 of 1, from 842 to 928: score 58.0, E = 1.2e-12
                   *->ekFrklFkLpeeEkLiadcekeVtysCyLsttg.............d
                       k+ ++  Lp eE ++         ++ L  +g+++ +++  ++++ 
    KIAA1766   842    PKILRPALLPGEEIVCEG------LRVLLDPDGreeatggllggpqL 882  

                   ipvqGrlyiSnnrlcFrSnlfgkltppqyykvviPLadItrieKst<-*
                   +p+ G l+++++r++Fr+ + ++l+ +q++++++P+a+It+ +K+t   
    KIAA1766   883 LPAEGALFLTTYRILFRGTPHDQLVGEQTVVRSFPIASITKEKKIT    928  

//