hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12162663/chunk_1/iprscan-20080502-12162663.nocrc
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Query sequence: KIAA1770
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF05699.5.fs hAT family dimerisation domain                  19.5    4.9e-05   2
PF05699.5.ls hAT family dimerisation domain                  17.4    0.00045   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF05699.5.fs   1/2    1185  1234 ..     1    49 [.    19.4  5.5e-05
PF05699.5.ls   1/1    1185  1281 ..     1    94 []    17.4  0.00045

Alignments of top-scoring domains:
PF05699.5.fs: domain 1 of 2, from 1185 to 1234: score 19.4, E = 5.5e-05
                   *->ELdkYlselpvlprnteprgle.dfdvLeWWkeaqnssryPiLsklA
                      E +++++e+++++ n+e++++e+ ++v +  +eaq+s+r+  + k+ 
    KIAA1770  1185    EKREQKDEEIPENANNEKMSMEtLLKVFKGGSEAQDSNRFASHLKIE 1231 

                   rdi<-*
                   +++   
    KIAA1770  1232 NIY    1234 

PF05699.5.ls: domain 1 of 1, from 1185 to 1281: score 17.4, E = 0.00045
                   *->ELdkYlselpvlprnteprgle.dfdvLeWWkeaqnssryPiLsklA
                      E +++++e+++++ n+e++++e+ ++v +  +eaq+s+r+  + k+ 
    KIAA1770  1185    EKREQKDEEIPENANNEKMSMEtLLKVFKGGSEAQDSNRFASHLKIE 1231 

                   rdiLsiPvssaas..ErsFStgklgrvldesrnrlepenveaLlcledwl
                   +++    + +    + ++    ++  +l +  + ++ +n++++ +  + +
    KIAA1770  1232 NIYAEGFIKTFQDlgAKNLEPIEVAVLLKHPFIQDLISNYSDYKFPVHII 1281 

                   <-*
                      
    KIAA1770     -     -    

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