hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12242578/chunk_1/iprscan-20080502-12242578.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1774 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.fs Cadherin domain 350.0 3.5e-102 7 PF00028.8.ls Cadherin domain 335.3 9.6e-98 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00028.8.fs 2/7 129 221 .. 1 107 [] 50.2 8.9e-14 PF00028.8.ls 1/6 129 221 .. 1 107 [] 52.1 1.8e-12 PF00028.8.ls 2/6 235 328 .. 1 107 [] 84.0 4.2e-22 PF00028.8.fs 3/7 235 328 .. 1 107 [] 82.1 6.1e-23 PF00028.8.ls 3/6 342 430 .. 1 107 [] 83.7 5.3e-22 PF00028.8.fs 4/7 342 430 .. 1 107 [] 81.9 7.3e-23 PF00028.8.ls 4/6 446 539 .. 1 107 [] 57.1 5.6e-14 PF00028.8.fs 5/7 446 534 .. 1 101 [. 57.1 9.1e-16 PF00028.8.fs 6/7 561 643 .. 1 96 [. 53.0 1.4e-14 PF00028.8.ls 5/6 561 656 .. 1 107 [] 48.5 2e-11 PF00028.8.ls 6/6 679 779 .. 1 107 [] 10.0 0.022 PF00028.8.fs 7/7 679 714 .. 1 38 [. 18.8 8.8e-05 Alignments of top-scoring domains: PF00028.8.fs: domain 2 of 7, from 129 to 221: score 50.2, E = 8.9e-14 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y ++ E+a +Gt+++ v+A+D+D g+Ng ++Y +l p+g KIAA1774 129 YMERILEGATPGTTLIAVAAVDPD--KGLNGLVTYTLLDLVPPGYVQ 173 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls ++ + + + +D+Ee + ++tv+A+D+ g+pp+ KIAA1774 174 LEDSSAGK---VIANRTVDYEEV--HWLNFTVRASDN-------GSPPRA 211 statvtitVl<-* ++ +v+ ++ KIAA1774 212 AEIPVYLEIV 221 PF00028.8.ls: domain 1 of 6, from 129 to 221: score 52.1, E = 1.8e-12 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y ++ E+a +Gt+++ v+A+D+D g+Ng ++Y +l p+g KIAA1774 129 YMERILEGATPGTTLIAVAAVDPD--KGLNGLVTYTLLDLVPPGYVQ 173 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls ++ + + + +D+Ee + ++tv+A+D+ g+pp+ KIAA1774 174 LEDSSAGK---VIANRTVDYEEV--HWLNFTVRASDN-------GSPPRA 211 statvtitVl<-* ++ +v+ ++ KIAA1774 212 AEIPVYLEIV 221 PF00028.8.ls: domain 2 of 6, from 235 to 328: score 84.0, E = 4.2e-22 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y+ v E++pvGt +ltvtAtDaD +g + i Ys+ g++ +F+ KIAA1774 235 YQEAVFEDVPVGTIILTVTATDAD--SGNFALIEYSLGDGES--KFA 277 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls I+p tGd i++ +LDRE+ + Y Lt +A+D+ + ++ ++ KIAA1774 278 INPTTGD----IYVLSSLDREKK--DHYILTALAKDNPGD---VASNRRE 318 statvtitVl<-* + ++v+i+Vl KIAA1774 319 NSVQVVIQVL 328 PF00028.8.fs: domain 3 of 7, from 235 to 328: score 82.1, E = 6.1e-23 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y+ v E++pvGt +ltvtAtDaD +g + i Ys+ g++ +F+ KIAA1774 235 YQEAVFEDVPVGTIILTVTATDAD--SGNFALIEYSLGDGES--KFA 277 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls I+p tGd i++ +LDRE+ + Y Lt +A+D+ + ++ ++ KIAA1774 278 INPTTGD----IYVLSSLDREKK--DHYILTALAKDNPGD---VASNRRE 318 statvtitVl<-* + ++v+i+Vl KIAA1774 319 NSVQVVIQVL 328 PF00028.8.ls: domain 3 of 6, from 342 to 430: score 83.7, E = 5.3e-22 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr +s sv En+p Gt+v+t+ AtD D +gpNg ++Ys+ g+++ F+ KIAA1774 342 FSTSVYENEPAGTSVITMMATDQD--EGPNGELTYSLEGPGV-EAFH 385 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +d d+G ++t++pL + ++++Ltv+AtD+ g+ppl KIAA1774 386 VDMDSGL----VTTQRPLQS--Y--EKFSLTVVATDG-------GEPPLW 420 statvtitVl<-* +t+++ ++V+ KIAA1774 421 GTTMLLVEVI 430 PF00028.8.fs: domain 4 of 7, from 342 to 430: score 81.9, E = 7.3e-23 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr +s sv En+p Gt+v+t+ AtD D +gpNg ++Ys+ g+++ F+ KIAA1774 342 FSTSVYENEPAGTSVITMMATDQD--EGPNGELTYSLEGPGV-EAFH 385 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +d d+G ++t++pL + ++++Ltv+AtD+ g+ppl KIAA1774 386 VDMDSGL----VTTQRPLQS--Y--EKFSLTVVATDG-------GEPPLW 420 statvtitVl<-* +t+++ ++V+ KIAA1774 421 GTTMLLVEVI 430 PF00028.8.ls: domain 4 of 6, from 446 to 539: score 57.1, E = 5.6e-14 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg +++E p + v v AtD+D +g+Ng +rYs+l++ +++ KIAA1774 446 TILHIREEIPLRSNVYEVYATDKD--EGLNGAVRYSFLKTAGnrdWE 490 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp F Idp +G i t+++LDRE++ Y+L+++A+D g+ KIAA1774 491 FFIIDPISGL----IQTAQRLDRESQ--AVYSLILVASDL--------GQ 526 plsstatvtitVl<-* p +++ +V KIAA1774 527 PVPYETMQPLQVA 539 PF00028.8.fs: domain 5 of 7, from 446 to 534: score 57.1, E = 9.1e-16 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg +++E p + v v AtD+D +g+Ng +rYs+l++ +++ KIAA1774 446 TILHIREEIPLRSNVYEVYATDKD--EGLNGAVRYSFLKTAGnrdWE 490 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp F Idp +G i t+++LDRE++ Y+L+++A+D g+p KIAA1774 491 FFIIDPISGL----IQTAQRLDRESQ--AVYSLILVASDL-------GQP 527 plsstat<-* ++ t + KIAA1774 528 VPYETMQ 534 PF00028.8.fs: domain 6 of 7, from 561 to 643: score 53.0, E = 1.4e-14 *->ysasvpEnapvGtevltvt.AtDaDdPlgpNgrirYsilggnpggwF + +vpE +p+Gt v++vt+A+DaD +gpN+ ++Y+i gn++++F KIAA1774 561 QLLTVPEHSPRGTLVGNVTgAVDAD--EGPNAIVYYFIAAGNEEKNF 605 rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl +++p +G + + + LDRE +++++v+A+ + ++ +pp+ KIAA1774 606 HLQP-DGC----LLVLRDLDRERE--AIFSFIVKASSN-----RSWTPPR 643 <-* KIAA1774 - - PF00028.8.ls: domain 5 of 6, from 561 to 656: score 48.5, E = 2e-11 *->ysasvpEnapvGtevltvt.AtDaDdPlgpNgrirYsilggnpggwF + +vpE +p+Gt v++vt+A+DaD +gpN+ ++Y+i gn++++F KIAA1774 561 QLLTVPEHSPRGTLVGNVTgAVDAD--EGPNAIVYYFIAAGNEEKNF 605 rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl +++p +G + + + LDRE +++++v+A+ + ++ +pp+ KIAA1774 606 HLQP-DGC----LLVLRDLDRERE--AIFSFIVKASSN-----RSWTPPR 643 ..sstatvtitVl<-* ++s t ++ ++ KIAA1774 644 gpSPTLDLVADLT 656 PF00028.8.ls: domain 6 of 6, from 679 to 779: score 10.0, E = 0.022 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y+a v +a+vG+e+++v A DaD g N+ ++Ysil + + KIAA1774 679 YTAGVATDAKVGSELIQVLALDAD--IGNNSLVFYSILAIHYfrala 723 ......ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadp +++++ g+ F++ + +G ++t ++ g +++ ++A+D + KIAA1774 724 ndsedvGQVFTMGSMDGI----LRTFDLFMAYSP--GYFVVDIVARDLA- 766 llasgggpplsstatvtitVl<-* + +ta + i +l KIAA1774 767 --------GHNDTAIIGIYIL 779 PF00028.8.fs: domain 7 of 7, from 679 to 714: score 18.8, E = 8.8e-05 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsil<-* y+a v +a+vG+e+++v A DaD g N+ ++Ysil KIAA1774 679 YTAGVATDAKVGSELIQVLALDAD--IGNNSLVFYSIL 714 //