hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12242578/chunk_1/iprscan-20080502-12242578.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1774 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00112 415.5 2.9e-120 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00112 1/6 24 119 .. 1 121 [] 2.5 1.3 SM00112 2/6 146 228 .. 1 121 [] 83.8 2.1e-20 SM00112 3/6 252 335 .. 1 121 [] 97.7 1.3e-24 SM00112 4/6 359 437 .. 1 121 [] 91.0 1.5e-22 SM00112 5/6 463 548 .. 1 121 [] 93.2 3.1e-23 SM00112 6/6 579 672 .. 1 121 [] 47.4 1.9e-09 Alignments of top-scoring domains: SM00112: domain 1 of 6, from 24 to 119: score 2.5, E = 1.3 *->vsAtDaDsgsngeNgkpgdaevvtYsils..............lFsI v + D + + + +++ +++ +++++ + KIAA1774 24 VPDSTGDRH---PLWG------LGGFGQEhpwegqilggssqaEPGL 61 dpetGtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDg +tG + ++ p +RE ++Y++t + D+ KIAA1774 62 VWSTG-----------SVMVKSPMNRELV---------ATYEVTLSVIDN 91 GgpppgdssptrksqqtpplsstatvtvtVlDvNDNaP<-* ++ p++s +a +tv+VlDvNDN P KIAA1774 92 ASDLPERSV----------SVPNAKLTVNVLDVNDNTP 119 SM00112: domain 2 of 6, from 146 to 228: score 83.8, E = 2.1e-20 *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp v A+D+D g Ng vtY++l+ ++++ ++++++ KIAA1774 146 VAAVDPDKG---LNGL------VTYTLLDlvppgYVQLEDSS----- 178 sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss + ++++++ D+Ee + ++tv+A+D+G+pp KIAA1774 179 -----AGKVIANRTVDYEEV---------HWLNFTVRASDNGSPP----- 209 ptrksqqtpplsstatvtvtVlDvNDNaP<-* + ++ +v +++D+NDN P KIAA1774 210 ----------RAAEIPVYLEIVDINDNNP 228 SM00112: domain 3 of 6, from 252 to 335: score 97.7, E = 1.3e-24 *->vsAtDaDsgsngeNgkpgdaevvtYsils...lFsIdpetGtngpsL v+AtDaDsg + + ++Ys+ +++++F+I+p+tG KIAA1774 252 VTATDADSG---NFAL------IEYSLGDgesKFAINPTTG------ 283 vkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdsspt +i+++ +LDRE++ ++Y Lt A+D+ g + KIAA1774 284 -----DIYVLSSLDREKK---------DHYILTALAKDNPGDVA------ 313 rksqqtpplsstatvtvtVlDvNDNaP<-* + ++ +++v+++VlDvND +P KIAA1774 314 -----SNRRENSVQVVIQVLDVNDCRP 335 SM00112: domain 4 of 6, from 359 to 437: score 91.0, E = 1.5e-22 *->vsAtDaDsgsngeNgkpgdaevvtYsils....lFsIdpetGtngps AtD D+g +Ng+ +tYs+++++ + F++d ++G KIAA1774 359 MMATDQDEG---PNGE------LTYSLEGpgveAFHVDMDSG----- 391 LvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssp +tt++pL e+ ++Ltv+AtDgG+pp KIAA1774 392 ------LVTTQRPLQSYEK-----------FSLTVVATDGGEPP------ 418 trksqqtpplsstatvtvtVlDvNDNaP<-* l +t+++ v+V+DvNDN+P KIAA1774 419 ---------LWGTTMLLVEVIDVNDNRP 437 SM00112: domain 5 of 6, from 463 to 548: score 93.2, E = 3.1e-23 *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt v AtD+D+g Ng v+Ys+l + ++++ ++F Idp +G KIAA1774 463 VYATDKDEG---LNGA------VRYSFLKtagnrdweFFIIDPISG- 499 ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg i t+++LDRE+q ++Y+L+ +A+D G+p p KIAA1774 500 ----------LIQTAQRLDRESQ---------AVYSLILVASDLGQPVP- 529 dssptrksqqtpplsstatvtvtVlDvNDNaP<-* ++ +++v ++D++DN P KIAA1774 530 -------------YETMQPLQVALEDIDDNEP 548 SM00112: domain 6 of 6, from 579 to 672: score 47.4, E = 1.9e-09 *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp A+DaD+g +N+ v Y i +++++ F++ p++ KIAA1774 579 TGAVDADEG---PNAI------VYYFIAAgneekNFHLQPDGC---- 612 sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss + +++ LDRE + ++++v+A+ + KIAA1774 613 --------LLVLRDLDRERE---------AIFSFIVKASSNR-------- 637 ptrks..........qqtpplsstatvtvtVlDvNDNaP<-* s +++++++++ + + +v+v ++D+ND +P KIAA1774 638 ----SwtpprgpsptLDLVADLTLQEVRVVLEDINDQPP 672 //