hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12260836/chunk_1/iprscan-20080502-12260836.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1775 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.fs Cadherin domain 251.8 1.3e-72 7 PF00028.8.ls Cadherin domain 250.2 3.9e-72 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00028.8.ls 1/6 39 125 .. 1 107 [] 31.0 3.9e-06 PF00028.8.fs 1/7 39 112 .. 1 84 [. 30.5 4e-08 PF00028.8.fs 2/7 139 236 .. 1 107 [] 61.9 4e-17 PF00028.8.ls 2/6 139 236 .. 1 107 [] 63.7 5.4e-16 PF00028.8.fs 3/7 250 343 .. 1 107 [] 62.0 3.7e-17 PF00028.8.ls 3/6 250 343 .. 1 107 [] 63.8 5.1e-16 PF00028.8.ls 4/6 362 462 .. 1 107 [] 1.3 0.11 PF00028.8.fs 5/7 476 566 .. 1 107 [] 72.9 2.7e-20 PF00028.8.ls 5/6 476 566 .. 1 107 [] 74.7 2.6e-19 PF00028.8.ls 6/6 577 676 .. 1 107 [] 15.7 0.0076 Alignments of top-scoring domains: PF00028.8.ls: domain 1 of 6, from 39 to 125: score 31.0, E = 3.9e-06 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp.ggwF +s+pE++pvG++v t++ tD+ p i+Y i+ +++++ F KIAA1775 39 ALFSLPEDTPVGSHVYTLNGTDPE--GDP---ISYHISFDPStRSVF 80 rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl ++dp G i+++++LDRE +e e +++ +D+ +l KIAA1775 81 SVDPTFGN----ITLVEELDRERE--DEIEAIISISDGL---------NL 115 sstatvtitVl<-* ++ v+i V+ KIAA1775 116 VAE-KVVILVT 125 PF00028.8.fs: domain 1 of 7, from 39 to 112: score 30.5, E = 4e-08 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp.ggwF +s+pE++pvG++v t++ tD+ p i+Y i+ +++++ F KIAA1775 39 ALFSLPEDTPVGSHVYTLNGTDPE--GDP---ISYHISFDPStRSVF 80 rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDa<-* ++dp G i+++++LDRE +e e +++ +D+ KIAA1775 81 SVDPTFGN----ITLVEELDRERE--DEIEAIISISDG 112 PF00028.8.fs: domain 2 of 7, from 139 to 236: score 61.9, E = 4e-17 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y+a vpE+ p G+ + v+A+D+D +g g+++Y++ + ++ F+ KIAA1775 139 YVALVPEDIPAGSIIFKVHAVDRD--TGSGGSVTYFLQNLHS--PFA 181 IdpdtGdnegiisttkp..LDREeifngeYeLtveAtDad.pllasgggp +d+++G+ +++++ +LD+E +++ +tv+A+D+++ l+ g+ KIAA1775 182 VDRHSGV----LRLQAGatLDYERS--RTHYITVVAKDGGgRLH--GADV 223 plsstatvtitVl<-* s+t+tvt++V+ KIAA1775 224 VFSATTTVTVNVE 236 PF00028.8.ls: domain 2 of 6, from 139 to 236: score 63.7, E = 5.4e-16 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y+a vpE+ p G+ + v+A+D+D +g g+++Y++ + ++ F+ KIAA1775 139 YVALVPEDIPAGSIIFKVHAVDRD--TGSGGSVTYFLQNLHS--PFA 181 IdpdtGdnegiisttkp..LDREeifngeYeLtveAtDad.pllasgggp +d+++G+ +++++ +LD+E +++ +tv+A+D+++ l+ g+ KIAA1775 182 VDRHSGV----LRLQAGatLDYERS--RTHYITVVAKDGGgRLH--GADV 223 plsstatvtitVl<-* s+t+tvt++V+ KIAA1775 224 VFSATTTVTVNVE 236 PF00028.8.fs: domain 3 of 7, from 250 to 343: score 62.0, E = 3.7e-17 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y + v E++ +G+evl v A D D +g ri Ys+++gn +g F+ KIAA1775 250 YYGYVYEDTLPGSEVLKVVAMDGD--RGKPNRILYSLVNGN-DGAFE 293 IdpdtGdnegiisttkp...LDREeifngeYeLtveAtDadpllasgggp I++ +G is+t+++ +L R + YeL+v +t + +++g+p KIAA1775 294 INETSGA----ISITQSpaqLQR-----EVYELHVQVTEM----SPAGSP 330 plsstatvtitVl<-* + +t++vti + KIAA1775 331 AAQATVPVTIRIV 343 PF00028.8.ls: domain 3 of 6, from 250 to 343: score 63.8, E = 5.1e-16 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y + v E++ +G+evl v A D D +g ri Ys+++gn +g F+ KIAA1775 250 YYGYVYEDTLPGSEVLKVVAMDGD--RGKPNRILYSLVNGN-DGAFE 293 IdpdtGdnegiisttkp...LDREeifngeYeLtveAtDadpllasgggp I++ +G is+t+++ +L R + YeL+v +t + +++g+p KIAA1775 294 INETSGA----ISITQSpaqLQR-----EVYELHVQVTEM----SPAGSP 330 plsstatvtitVl<-* + +t++vti + KIAA1775 331 AAQATVPVTIRIV 343 PF00028.8.ls: domain 4 of 6, from 362 to 462: score 1.3, E = 0.11 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++ s+ E p G + +++t D + + +++++++ +p+g+Fr KIAA1775 362 FELSMNEHPPQGEILRGLKITVND--SDQGANAKFNLQLVGPRGIFR 406 IdpdtGdnegi..isttkp..LDREeifngeYeLtveAtDadpllasggg + p+t ne+ +i + + +D E+ ++ ++A+ + KIAA1775 407 VVPQTVLNEAQvtIIVENSaaIDFEKS--KVLTFKLLAVEVN------TP 448 pplsstatvtitVl<-* ssta v+i++l KIAA1775 449 EKFSSTADVVIQLL 462 PF00028.8.fs: domain 5 of 7, from 476 to 566: score 72.9, E = 2.7e-20 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y+a++pEnap G++v vtA+D+D +gp g ++Ys g++ ++ F KIAA1775 476 YVARIPENAPGGSSVVAVTAVDPD--TGPWGEVKYSTYGTG-ADLFL 519 IdpdtGdnegiistt..kpLDREeifngeYeLtveAtDadpllasgggpp I+p tG i+t++ ++LD E++ +Y+++v+A D+ + KIAA1775 520 IHPSTGL----IYTQpwASLDAEAT--ARYNFYVKAEDM---------EG 554 lsstatvtitVl<-* ++s+a+v it+l KIAA1775 555 KYSVAEVFITLL 566 PF00028.8.ls: domain 5 of 6, from 476 to 566: score 74.7, E = 2.6e-19 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y+a++pEnap G++v vtA+D+D +gp g ++Ys g++ ++ F KIAA1775 476 YVARIPENAPGGSSVVAVTAVDPD--TGPWGEVKYSTYGTG-ADLFL 519 IdpdtGdnegiistt..kpLDREeifngeYeLtveAtDadpllasgggpp I+p tG i+t++ ++LD E++ +Y+++v+A D+ + KIAA1775 520 IHPSTGL----IYTQpwASLDAEAT--ARYNFYVKAEDM---------EG 554 lsstatvtitVl<-* ++s+a+v it+l KIAA1775 555 KYSVAEVFITLL 566 PF00028.8.ls: domain 6 of 6, from 577 to 676: score 15.7, E = 0.0076 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr s++ + + + Gt+v + A+D D + pN + Ysi+ +p++ F KIAA1775 577 KSVQKK-TMVLGTPV-KIEAIDEDA-EEPNNLVDYSITHAEPANVFD 620 IdpdtGdnegiisttkp...LDREeif.......ngeYeLtveAtDadpl I+++tG+ i+++ + ++LD ++ +++++ +L v A+D+ KIAA1775 621 INSHTGE----IWLKNSirsLDA---LhnitpgrDCLWSLEVQAKDR--- 660 lasgggpplsstatvtitVl<-* g+p+ s+ta + i ++ KIAA1775 661 ----GSPSFSTTALLKIDIT 676 //