hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12320481/chunk_1/iprscan-20080502-12320481.nocrc
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Query sequence: KIAA1778
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02214.13.fs K+ channel tetramerisation domain               54.8    5.3e-16   1
PF02214.13.ls K+ channel tetramerisation domain               56.7    7.3e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02214.13.fs   1/1      52   145 ..     1   102 []    54.8  5.3e-16
PF02214.13.ls   1/1      52   145 ..     1   102 []    56.7  7.3e-14

Alignments of top-scoring domains:
PF02214.13.fs: domain 1 of 1, from 52 to 145: score 54.8, E = 5.3e-16
                   *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktdsheailrlcdfydd
                      v LNVGG ++ T++ T     Pd+lL r++      ++ +l ++ + 
    KIAA1778    52    VELNVGGQVYVTRRCTVVSV-PDSLLWRMFT---QQQPQELARDSKG 94   

                   dtnEyFFDRsPkhFetILnfYRtGdGkLhrp.evclds.fleEleFygld
                   +   +F DR+  +F++IL+++R+    L  p++ +++s++++E+e+++l+
    KIAA1778    95 R---FFLDRDGFLFRYILDYLRD--LQLVLPdYFPERSrLQREAEYFELP 139  

                   elaielC<-*
                   el +      
    KIAA1778   140 EL-VRRL    145  

PF02214.13.ls: domain 1 of 1, from 52 to 145: score 56.7, E = 7.3e-14
                   *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktdsheailrlcdfydd
                      v LNVGG ++ T++ T     Pd+lL r++      ++ +l ++ + 
    KIAA1778    52    VELNVGGQVYVTRRCTVVSV-PDSLLWRMFT---QQQPQELARDSKG 94   

                   dtnEyFFDRsPkhFetILnfYRtGdGkLhrp.evclds.fleEleFygld
                   +   +F DR+  +F++IL+++R+    L  p++ +++s++++E+e+++l+
    KIAA1778    95 R---FFLDRDGFLFRYILDYLRD--LQLVLPdYFPERSrLQREAEYFELP 139  

                   elaielC<-*
                   el +      
    KIAA1778   140 EL-VRRL    145  

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