hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12471650/chunk_1/iprscan-20080502-12471650.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1787 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07177.3.ls Neuralized 186.2 7.1e-53 6 PF07177.3.fs Neuralized 178.7 3.3e-51 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07177.3.ls 1/6 46 113 .. 1 71 [] 23.9 2.5e-06 PF07177.3.fs 1/6 47 113 .. 6 71 .] 25.1 1.1e-06 PF07177.3.fs 2/6 319 389 .. 1 71 [] 34.5 2e-09 PF07177.3.ls 2/6 319 389 .. 1 71 [] 36.5 8.7e-08 PF07177.3.ls 3/6 522 592 .. 1 71 [] 25.1 1.9e-06 PF07177.3.fs 3/6 522 592 .. 1 71 [] 23.1 4e-06 PF07177.3.fs 4/6 718 788 .. 1 71 [] 27.9 1.7e-07 PF07177.3.ls 4/6 718 788 .. 1 71 [] 29.8 5.7e-07 PF07177.3.fs 5/6 917 982 .. 4 71 .] 56.5 8.7e-16 PF07177.3.ls 5/6 917 982 .. 1 71 [] 57.4 4.4e-14 PF07177.3.ls 6/6 1133 1200 .. 1 71 [] 13.6 3.3e-05 Alignments of top-scoring domains: PF07177.3.ls: domain 1 of 6, from 46 to 113: score 23.9, E = 2.5e-06 *->PLsRFHpnthGsNvrldddrtvAkRTr...sSFCdaitFSaRPvrIg + Hp +G+ v l+ +++A+R ++++ F +++ S P+r g KIAA1787 46 --L--HP-RTGRLVSLSACGRTARR-QqpgQEFNHGLVLSREPLRDG 86 ErvclkvlkieegWsGaLRlGfTslDP<-* + +++ ++ + WsG + G+T lDP KIAA1787 87 RVFTVRIDRKVNSWSGSIEIGVTALDP 113 PF07177.3.fs: domain 1 of 6, from 47 to 113: score 25.1, E = 1.1e-06 *->HpnthGsNvrldddrtvAkRTr...sSFCdaitFSaRPvrIgErvcl Hp +G+ v l+ +++A+R ++++ F +++ S P+r g + + KIAA1787 47 HP-RTGRLVSLSACGRTARR-QqpgQEFNHGLVLSREPLRDGRVFTV 91 kvlkieegWsGaLRlGfTslDP<-* ++ ++ + WsG + G+T lDP KIAA1787 92 RIDRKVNSWSGSIEIGVTALDP 113 PF07177.3.fs: domain 2 of 6, from 319 to 389: score 34.5, E = 2e-09 *->PLsRFHpnthGsNvrldddrtvAkRTr...sSFCdaitFSaRPvrIg +L+ FH G + l+ + ++A R r++ F ++ + ++RP+r + KIAA1787 319 ALL-FH-EKCGTLIKLSNNNKTAER-RrplDEFNNGVVMTNRPLRDN 362 ErvclkvlkieegWsGaLRlGfTslDP<-* E + +++ k WsG + G+T +P KIAA1787 363 EMFEIRIDKLVDKWSGSIEIGVTTHNP 389 PF07177.3.ls: domain 2 of 6, from 319 to 389: score 36.5, E = 8.7e-08 *->PLsRFHpnthGsNvrldddrtvAkRTr...sSFCdaitFSaRPvrIg +L+ FH G + l+ + ++A R r++ F ++ + ++RP+r + KIAA1787 319 ALL-FH-EKCGTLIKLSNNNKTAER-RrplDEFNNGVVMTNRPLRDN 362 ErvclkvlkieegWsGaLRlGfTslDP<-* E + +++ k WsG + G+T +P KIAA1787 363 EMFEIRIDKLVDKWSGSIEIGVTTHNP 389 PF07177.3.ls: domain 3 of 6, from 522 to 592: score 25.1, E = 1.9e-06 *->PLsRFHpnthGsNvrldddrtvAkR..TrsSFCdaitFSaRPvrIgE L+ FHpn G + +++A R++ +F + + S R +r gE KIAA1787 522 RLL-FHPN-CGQKAAITHEGRTALRphATDDFNHGVVLSSRALRDGE 566 rvclkvlkieegWsGaLRlGfTslDP<-* + +++ k W G + G+T +P KIAA1787 567 VFQVRIDKMVDKWAGSIEIGVTTHNP 592 PF07177.3.fs: domain 3 of 6, from 522 to 592: score 23.1, E = 4e-06 *->PLsRFHpnthGsNvrldddrtvAkR..TrsSFCdaitFSaRPvrIgE L+ FHpn G + +++A R++ +F + + S R +r gE KIAA1787 522 RLL-FHPN-CGQKAAITHEGRTALRphATDDFNHGVVLSSRALRDGE 566 rvclkvlkieegWsGaLRlGfTslDP<-* + +++ k W G + G+T +P KIAA1787 567 VFQVRIDKMVDKWAGSIEIGVTTHNP 592 PF07177.3.fs: domain 4 of 6, from 718 to 788: score 27.9, E = 1.7e-07 *->PLsRFHpnthGsNvrldddrtvAkR..TrsSFCdaitFSaRPvrIgE L FH hGsN ++ +++A R++ rs F dai+ S+R +r gE KIAA1787 718 DLR-FH-QLHGSNAVITNGGRTALRhnCRSEFNDAIVISNRALRDGE 762 rvclkvlkieegWsGaLRlGfTslDP<-* + + + k WsG + G+T P KIAA1787 763 LFEIVIQKMVDRWSGSIEAGVTAIRP 788 PF07177.3.ls: domain 4 of 6, from 718 to 788: score 29.8, E = 5.7e-07 *->PLsRFHpnthGsNvrldddrtvAkR..TrsSFCdaitFSaRPvrIgE L FH hGsN ++ +++A R++ rs F dai+ S+R +r gE KIAA1787 718 DLR-FH-QLHGSNAVITNGGRTALRhnCRSEFNDAIVISNRALRDGE 762 rvclkvlkieegWsGaLRlGfTslDP<-* + + + k WsG + G+T P KIAA1787 763 LFEIVIQKMVDRWSGSIEAGVTAIRP 788 PF07177.3.fs: domain 5 of 6, from 917 to 982: score 56.5, E = 8.7e-16 *->RFHpnthGsNvrldddrtvAkRTrsSFCdaitFSaRPvrIgErvclk RFH+ t G Nv l d+t A R + + +++FS +r E + +k KIAA1787 917 RFHS-TCGKNVTLEEDGTRAVR-AAGYAHGLVFSTKELRAEEVFEVK 961 vlkieegWsGaLRlGfTslDP<-* v++ e W G LRlG+T l+P KIAA1787 962 VEELDEKWAGSLRLGLTTLAP 982 PF07177.3.ls: domain 5 of 6, from 917 to 982: score 57.4, E = 4.4e-14 *->PLsRFHpnthGsNvrldddrtvAkRTrsSFCdaitFSaRPvrIgErv RFH+ t G Nv l d+t A R + + +++FS +r E + KIAA1787 917 ---RFHS-TCGKNVTLEEDGTRAVR-AAGYAHGLVFSTKELRAEEVF 958 clkvlkieegWsGaLRlGfTslDP<-* +kv++ e W G LRlG+T l+P KIAA1787 959 EVKVEELDEKWAGSLRLGLTTLAP 982 PF07177.3.ls: domain 6 of 6, from 1133 to 1200: score 13.6, E = 3.3e-05 *->PLsRFHpnthGsNvrldddrtvAkRTrsSFCdaitFSaRPvrIgErv L F n hG N++l+ ++A R +S ++i+ + P+ + v KIAA1787 1133 TLE-FLEN-HGKNILLSNGNRTATR-VASYNQGIVVINQPLVPQLLV 1176 clkvlkieegWsGaLRlGfTslDP<-* +++ + W L lG+ ++P KIAA1787 1177 QVRIDFLNRQWTSSLVLGVITCAP 1200 //