hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12471650/chunk_1/iprscan-20080502-12471650.nocrc
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Query sequence: KIAA1787
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00588                                                 731.7     2e-215   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00588    1/6      47   165 ..     1   128 []   114.7    1e-29
SM00588    2/6     317   442 ..     1   128 []   188.4  6.9e-52
SM00588    3/6     520   644 ..     1   128 []   168.7  5.6e-46
SM00588    4/6     716   840 ..     1   128 []   145.1  7.2e-39
SM00588    5/6     913  1044 ..     1   128 []    82.0  7.2e-20
SM00588    6/6    1131  1251 ..     1   128 []    32.7  2.6e-06

Alignments of top-scoring domains:
SM00588: domain 1 of 6, from 47 to 165: score 114.7, E = 1e-29
                   *->rgpLrFHasihGsnirlsdsgrvAsRpnseseFcnAlVFSaRPlrin
                            H ++ G+ + ls  gr+A+R  +  eF+++lV+S++Plr++
    KIAA1787    47    ------H-PRTGRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDG 86   

                   ElfeVkiekvvrkWsGalrfGVTscdPavlrpaslpTnarsdlvdmsgfw
                     f V+i+++v+ WsG++++GVT+ dP+vl+++s +T +  + ++ sg+ 
    KIAA1787    87 RVFTVRIDRKVNSWSGSIEIGVTALDPSVLDFPSSATGLKGGSWVVSGCS 136  

                   vkalgeqliPeeggiLgldvlaeGevvgvin<-*
                   v+ +g+ ++ ee+g+ +ld l+eG++vgv +   
    KIAA1787   137 VLRDGRSVL-EEYGQ-DLDQLGEGDRVGVER    165  

SM00588: domain 2 of 6, from 317 to 442: score 188.4, E = 6.9e-52
                   *->rgpLrFHasihGsnirlsdsgrvAsRpnseseFcnAlVFSaRPlrin
                       ++L FH   +G+ i+ls+++++A+R+++++eF+n++V+++RPlr+n
    KIAA1787   317    NDALLFH-EKCGTLIKLSNNNKTAERRRPLDEFNNGVVMTNRPLRDN 362  

                   ElfeVkiekvvrkWsGalrfGVTscdPavlrpaslpTnarsdlvdmsgfw
                   E fe++i+k+v+kWsG++++GVT+++P++l+ ++++Tn+ s++++msg++
    KIAA1787   363 EMFEIRIDKLVDKWSGSIEIGVTTHNPNSLEYPATMTNLQSGTIMMSGCG 412  

                   vkalgeqliPeeggiLgldvlaeGevvgvin<-*
                   ++++g++++ +e+ +++ld+l+eG+ +g  +   
    KIAA1787   413 ILTNGKGTR-REYCEFSLDELQEGDHIGLTR    442  

SM00588: domain 3 of 6, from 520 to 644: score 168.7, E = 5.6e-46
                   *->rgpLrFHasihGsnirlsdsgrvAsRpnseseFcnAlVFSaRPlrin
                       ++L FH + +G  + ++ +gr+A Rp + ++F++++V+S+R lr++
    KIAA1787   520    PERLLFH-PNCGQKAAITHEGRTALRPHATDDFNHGVVLSSRALRDG 565  

                   ElfeVkiekvvrkWsGalrfGVTscdPavlrpaslpTnarsdlvdmsgfw
                   E f+V+i+k+v+kW+G++++GVT+++Pa l+++s++Tn+rs++++m+g++
    KIAA1787   566 EVFQVRIDKMVDKWAGSIEIGVTTHNPAYLQLPSTMTNLRSGTWMMTGNG 615  

                   vkalgeqliPeeggiLgldvlaeGevvgvin<-*
                   v+ +g++ +  e+g  +ld+l++G+ vgv++   
    KIAA1787   616 VMHNGTTIL-DEYGH-NLDRLKAGDTVGVVR    644  

SM00588: domain 4 of 6, from 716 to 840: score 145.1, E = 7.2e-39
                   *->rgpLrFHasihGsnirlsdsgrvAsRpnseseFcnAlVFSaRPlrin
                        +LrFH   hGsn+++++ gr+A R n +seF++A+V S+R lr++
    KIAA1787   716    GSDLRFH-QLHGSNAVITNGGRTALRHNCRSEFNDAIVISNRALRDG 761  

                   ElfeVkiekvvrkWsGalrfGVTscdPavlrpaslpTnarsdlvdmsgfw
                   Elfe++i k+v+ WsG+++ GVT+ +P++l+++ ++T+   d+++ sg  
    KIAA1787   762 ELFEIVIQKMVDRWSGSIEAGVTAIRPEDLEFPNTMTDIDYDTWMLSGTA 811  

                   vkalgeqliPeeggiLgldvlaeGevvgvin<-*
                   ++++g + + + +g  +ld l++G ++g+++   
    KIAA1787   812 IMQDGNTMR-NNYGC-DLDALGTGARIGMMR    840  

SM00588: domain 5 of 6, from 913 to 1044: score 82.0, E = 7.2e-20
                   *->rgpLrFHasihGsnirlsdsgrvAsRpnseseFcnAlVFSaRPlrin
                       ++ rFH s++G n++l  +g+ A R  +++ ++++lVFS   lr  
    KIAA1787   913    GVAHRFH-STCGKNVTLEEDGTRAVR--AAG-YAHGLVFSTKELRAE 955  

                   ElfeVkiekvvrkWsGalrfGVTscdPavl..........rpaslpTnar
                   E feVk+e++  kW+G+lr+G+T+ +P++ +++ ++++++ p+slp    
    KIAA1787   956 EVFEVKVEELDEKWAGSLRLGLTTLAPGEMgpgaggggpgLPPSLPELRT 1005 

                   sdlvdmsgfwvkalgeqliPeeggiLgldvlaeGevvgvin<-*
                     +++ s + v+ +g  ++   +g  +l++l+ G +vgv +   
    KIAA1787  1006 KTTWMVSSCEVRRDGQLQR-MNYGR-NLERLGVGSRVGVRR    1044 

SM00588: domain 6 of 6, from 1131 to 1251: score 32.7, E = 2.6e-06
                   *->rgpLrFHasihGsnirlsdsgrvAsRpnseseFcnAlVFSaRPlrin
                       + L F    hG ni ls+ +r+A+R   +s +++++V  + Pl + 
    KIAA1787  1131    PTTLEFL-ENHGKNILLSNGNRTATR--VAS-YNQGIVVINQPLVPQ 1173 

                   ElfeVkiekvvrkWsGalrfGVTscdPavlrpaslpTnarsdlvdmsgfw
                    l++V+i+ ++r W  +l +GV +c+P++l +++ + ++  + +   g +
    KIAA1787  1174 LLVQVRIDFLNRQWTSSLVLGVITCAPERLNFPASACALKRAAWLLRGRG 1223 

                   vkalgeqliPeeggiLgldvlaeGevvgvin<-*
                   v  +g + + e+ g  +ld+ +eG+ +++ +   
    KIAA1787  1224 VFHNGLKIC-EKFGP-NLDTCPEGT-ILGLR    1251 

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