hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12485850/chunk_1/iprscan-20080502-12485850.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1788 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00046.19.ls Homeobox domain 126.3 7.7e-35 1 PF00046.19.fs Homeobox domain 124.3 3.1e-34 1 PF03826.7.fs OAR domain 42.4 1.6e-12 1 PF03826.7.ls OAR domain 44.4 3.6e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00046.19.fs 1/1 217 273 .. 1 57 [] 124.3 3.1e-34 PF00046.19.ls 1/1 217 273 .. 1 57 [] 126.3 7.7e-35 PF03826.7.fs 1/1 388 408 .. 1 21 [] 42.4 1.6e-12 PF03826.7.ls 1/1 388 408 .. 1 21 [] 44.4 3.6e-10 Alignments of top-scoring domains: PF00046.19.fs: domain 1 of 1, from 217 to 273: score 124.3, E = 3.1e-34 *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW rr+RTtft++QleeLEk+Fqk++YP++ +Re+LA++++Lte++V+vW KIAA1788 217 RRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVW 263 FQNRRaKwKk<-* FQNRRaKw+k KIAA1788 264 FQNRRAKWRK 273 PF00046.19.ls: domain 1 of 1, from 217 to 273: score 126.3, E = 7.7e-35 *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW rr+RTtft++QleeLEk+Fqk++YP++ +Re+LA++++Lte++V+vW KIAA1788 217 RRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVW 263 FQNRRaKwKk<-* FQNRRaKw+k KIAA1788 264 FQNRRAKWRK 273 PF03826.7.fs: domain 1 of 1, from 388 to 408: score 42.4, E = 1.6e-12 *->edprssSIAaLRlKAKEHsaa<-* +d+++sSIAaLR+KAKEHsaa KIAA1788 388 PDRKTSSIAALRMKAKEHSAA 408 PF03826.7.ls: domain 1 of 1, from 388 to 408: score 44.4, E = 3.6e-10 *->edprssSIAaLRlKAKEHsaa<-* +d+++sSIAaLR+KAKEHsaa KIAA1788 388 PDRKTSSIAALRMKAKEHSAA 408 //