hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12522152/chunk_1/iprscan-20080502-12522152.nocrc
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Query sequence: KIAA1790
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 133.7    1.9e-35   1
SM00219                                                  76.1    4.4e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1     596   874 ..     1   280 []    76.1  4.4e-18
SM00220    1/1     596   879 ..     1   231 []   133.7  1.9e-35

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 596 to 874: score 76.1, E = 4.4e-18
                   *->ltlgkkLGeGaFGeV.ykGtlk.ieVAVKtLkeda............
                         g +LG G  G+V y++++ +++VAVK  +  + ++  + + ++ 
    KIAA1790   596    EDEGSVLGQGGSGTViYRARYQgQPVAVKRFHIKKfknfanvpadtm 642  

                   ............keeFlrEakiMkklGgkHpNiVkLlGvcteegrrFmev
                    ++ + ++  ++  eF++Ea++++ l  +Hp+iV+L+G+ +         
    KIAA1790   643 lrhlratdamknFSEFRQEASMLHAL--QHPCIVALIGISI--------- 681  

                   ePlmivmEymegGdLldyLrknrpk...lslsdLl..sfAlQIAkGMeYL
                   +Pl+  +E++++ +L+  L +n ++++ ++l ++l++++A+QIA+G +YL
    KIAA1790   682 HPLCFALELAPLSSLNTVLSENARDssfIPLGHMLtqKIAYQIASGLAYL 731  

                   esknfvHRDLAARNcLvgenk.....vvKIsDFGLsRdlyddDkkGeskd
                   ++kn++  DL   N+Lv +   +++  +K sD G sR   ++      + 
    KIAA1790   732 HKKNIIFCDLKSDNILVWSLDvkehiNIKLSDYGISRQSFHE------GA 775  

                   yYrkkggkggktllPirWmAPEslkdgkFtskSDVWSFGVlLWEiftlGe
                     +     g+ +       APE     ++ +k D +S+G +L+E+++ G+
    KIAA1790   776 LGVE----GTPG-----YQAPEIRPRIVYDEKVDMFSYGMVLYELLS-GQ 815  

                   qPYpgeiqqfmsneevleylkkGyR..lpkPendlpiSsvtCPdelYdlM
                    P  g         ++ ++l kG R+ l +Pe++           l  lM
    KIAA1790   816 RPALG-----HHQLQIAKKLSKGIRpvLGQPEEV-------QFRRLQALM 853  

                   lqCWaedPedRPtFselverl<-*
                    +CW+ +Pe+RP    +v+++   
    KIAA1790   854 MECWDTKPEKRPLALSVVSQM    874  

SM00220: domain 1 of 1, from 596 to 879: score 133.7, E = 1.9e-35
                   *->YellkklGkGaFGkV.ylardkktgrlvAiKvik.............
                       + + +lG+G+ G+V y+ar  +  + vA+K+ + ++ ++  + + +
    KIAA1790   596    EDEGSVLGQGGSGTViYRARYQG--QPVAVKRFHikkfknfanvpad 640  

                   ...............erilrEikiLkk.dHPNIVkLydvfeddklylVmE
                   +  ++ + ++  ++   +++E ++L+  +HP IV L+++   + l++ +E
    KIAA1790   641 tmlrhlratdamknfSEFRQEASMLHAlQHPCIVALIGISI-HPLCFALE 689  

                   yceGdlGdLfdllkkrgrrglrkvlsE.earfyfrQilsaLeYLHsqgIi
                   +++    +L ++l ++ r     +l    ++++++Qi+s+L+YLH+++Ii
    KIAA1790   690 LAPL--SSLNTVLSENARDSSFIPLGHmLTQKIAYQIASGLAYLHKKNII 737  

                   HRDLKPeNiLLds.......hvKlaDFGlArql.....ttfvGTpeYmAP
                    +DLK +NiL+ s + +++ ++Kl+D G++rq  +++   + GTp Y AP
    KIAA1790   738 FCDLKSDNILVWSldvkehiNIKLSDYGISRQSfhegaLGVEGTPGYQAP 787  

                   Evl...gYgkpavDiWSlGcilyElltGkpPFp..qldlifkkig.....
                   E+ ++  Y+  +vD+ S G +lyEll+G+ P  ++++ +i kk+ ++ ++
    KIAA1790   788 EIRpriVYDE-KVDMFSYGMVLYELLSGQRPALghHQLQIAKKLSkgirp 836  

                   .........SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                     + +++   + +  L++ +++  PekR+ a  +       +++P f   
    KIAA1790   837 vlgqpeevqFRRLQALMMECWDTKPEKRPLAlSVVS----QMKDPTF    879  

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