hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12540522/chunk_1/iprscan-20080502-12540522.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1791 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00220 -86.1 0.0015 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00220 1/1 1 139 [. 1 231 [] -86.1 0.0015 Alignments of top-scoring domains: SM00220: domain 1 of 1, from 1 to 139: score -86.1, E = 0.0015 *->YellkklGkGaFGkVylardkktgrlvAiKvikerilrEikiLkkdH KIAA1791 - ----------------------------------------------- - PNIVkLydvfeddklylVmEyceGdlGdLfdllkkrgrrglrkvlsEear Lf++ +r++ KIAA1791 1 ---------------------------RLFSVFFSRPY------------ 11 fyfrQilsaLeYLHsqgIiHRDLKPeNiLLdshvKlaDFGlArqlttfvG t v KIAA1791 12 ---------------------------------------------TNKVI 16 TpeYmAPEvl....gYgkpavDiWSlGcilyElltGkpPFp......qld T++Y++PE+l +++ Y++ a+D+WS+Gcil El+t kp F+ +++ ql+ KIAA1791 17 TLWYRPPELLlgeeRYTP-AIDVWSCGCILGELFTKKPIFQanqelaQLE 65 lifkkig....................................SpeakdL li +++g++ + +++ + ++ ++ ++++ ++++ +++ + a+dL KIAA1791 66 LISRICGspcpavwpdviklpyfntmkpkkqyrrklreefvfiPAAALDL 115 ikklLvkdPekRlta.eaLedeldikaHPff<-* + +L dP+kR ta++aL+ +f+ KIAA1791 116 FDYMLALDPSKRCTAeQALQ-------CEFL 139 //