HUGE

Gene/Protein Characteristic Table for KIAA1794

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04982
Accession No. :	AB058697
Description :	Fanconi anemia group I protein.
HUGO Gene Name :
Clone Name :	fj08520 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4671 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 670 bp

Genome contig ID gi51511731f_87522915
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
AAGAATGCACTCTATAGAATAAATTCTCTTTAAAC
Flanking genome sequence
(138450 - 138499)
----+----*----+----*----+----*----+----*----+----*
ATTTCTTCTGTGGTTGAAGTAGGGGACAGGTACAGGTAGAATATTTGAAG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 15 f 87622915 87661363 24 99.7 Perfect prediction

Features of the protein sequence	Description

Length: 802 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
ABP88002	99.9	Fanconi anemia ...	Homo sapiens
AAI44484	99.8	Fanconi anemia,...	Homo sapiens
Q9NVI1	99.6	Fanconi anemia ...	Homo sapiens
XP_001166960	99.0	hypothetical pr...	Pan troglodytes
XP_001166767	94.5	hypothetical pr...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CCACCTCAAGAACTGTAACTG

Primer_r
: CAGACCCTCCTAACATGTAAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 15

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	670 bp
Genome contig ID	gi51511731f_87522915
PolyA signal sequence (AATAAA,-18)	+--------+--------+----*----+---- AAGAATGCACTCTATAGAATAAATTCTCTTTAAAC
Flanking genome sequence (138450 - 138499)	----+--------+--------+--------+--------+----* ATTTCTTCTGTGGTTGAAGTAGGGGACAGGTACAGGTAGAATATTTGAAG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	15	f	87622915	87661363	24	99.7	Perfect prediction

Primer_f	: CCACCTCAAGAACTGTAACTG
Primer_r	: CAGACCCTCCTAACATGTAAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1794

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information