HUGE

Gene/Protein Characteristic Table for KIAA1797

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05712
Accession No. :	AB058700
Description :
HUGO Gene Name :
Clone Name :	fj20494 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4195 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 319 bp

Genome contig ID gi89161216f_20710293
PolyA signal sequence
(AGTAAA,-17)
+----*----+----*----+----*----+----
TTCTCCCTGCTAAATTCCAGTAAAATAATGTTGTC
Flanking genome sequence
(275656 - 275705)
----+----*----+----*----+----*----+----*----+----*
AATTTTGTGCGTGTGACTTTTGTTTTAAGGCATGGGGGAAGGTGCCAGAA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 9 f 20810293 20985947 32 99.9 Perfect prediction

Features of the protein sequence	Description

Length: 1281 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAN17740	100.0	hypothetical pr...	Homo sapiens
XP_001151311	99.5	hypothetical pr...	Pan troglodytes
XP_001151382	99.5	hypothetical pr...	Pan troglodytes
XP_001151442	99.5	hypothetical pr...	Pan troglodytes
XP_538678	90.0	similar to CG35...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 1145 ALDEALDFFLLIFATAVVAWADH 1167 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1145	ALDEALDFFLLIFATAVVAWADH	1167	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: ACTCTCCTTCCCAATAGCATG

Primer_r
: AGAACTCTCAAGGACAGCAGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 9

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	319 bp
Genome contig ID	gi89161216f_20710293
PolyA signal sequence (AGTAAA,-17)	+--------+--------+----*----+---- TTCTCCCTGCTAAATTCCAGTAAAATAATGTTGTC
Flanking genome sequence (275656 - 275705)	----+--------+--------+--------+--------+----* AATTTTGTGCGTGTGACTTTTGTTTTAAGGCATGGGGGAAGGTGCCAGAA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	9	f	20810293	20985947	32	99.9	Perfect prediction

Primer_f	: ACTCTCCTTCCCAATAGCATG
Primer_r	: AGAACTCTCAAGGACAGCAGG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1797

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information