# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj21226.fasta.huge -Q ../query/KIAA1800.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1800, 736 aa
 vs ./tmplib.25089 library

1986769 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.0395+/-0.00455; mu= 19.9296+/- 0.310
 mean_var=81.4173+/-19.641, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.142140

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1792  ( 808 res)   fh27316                     ( 808)  214 54.3 5.6e-08


>>KIAA1792  ( 808 res)   fh27316                          (808 aa)
 initn: 245 init1:  92 opt: 214  Z-score: 235.1  bits: 54.3 E(): 5.6e-08
Smith-Waterman score: 304;  20.603% identity (53.266% similar) in 597 aa overlap (184-729:239-804)

           160       170       180       190        200       210  
KIAA18 EMIPLCNHPASFVKLFVALGPIAGPEEKKQLKSTMLLMSEDLTGE-QALAVLGAMGDMES
                                     .:. .:. ..:: .  .:...::   .   
KIAA17 DYLCKLSSLPAEQHPVLLGSTSFALLCQLSVKKIQLFDTQDLINVLKAFVILGIPHSHSM
      210       220       230       240       250       260        

            220       230       240       250       260       270  
KIAA18 RNSCLIKRVTSVLHKHLDGYKPLELLKITQELTFLHFQRKEFFAKLRELLLSYLKNSFIP
        .    :   .: . ..:     .:: ...   .:  .  .:.    ... :::.  .  
KIAA17 LDVYETKCCHQVWEMNMD-----QLLLVADLWRYLGRKVPRFL----NIFSSYLNLHWKD
      270       280            290       300           310         

            280        290       300        310       320       330
KIAA18 TEVSVLVRAISLL-PSPHLDEVGISRIEA-VLPQCDLNNLSSFATSVLRWIQHDHVYLDN
         .: ::. : ..  . ....  ....:. .:   :: ::   .:  : ... .     :
KIAA17 LSLSQLVHLIYVIGENRQVSQDLMQKLESLILKYIDLINLEEVGTICLGFFKSS----TN
     320       330       340       350       360       370         

              340       350       360       370        380         
KIAA18 MTAKQLKLLQKLDHYGRQRLQHSNSLDLLRKELKSLKGNTFPE-SLLEEMIATLQHFMDD
       ..     ...:.   .   .:: .: .:.   .: .. .   . ......     . . .
KIAA17 LSE---FVMRKIGDLACANIQHLSSRSLVNI-VKMFRFTHVDHINFMKQIGEIAPQRIPS
            380       390       400        410       420       430 

     390       400       410       420       430       440         
KIAA18 INYINVGEIASFISSTDYLSTLLLDRIASVAVQQIEKIHPFTIPAIIRPFSVLNYDPPQR
       ..  .: ... . :.  .:.  ... .:.    .. . .   .  :.  :..::: ::. 
KIAA17 LGVQGVMHLTLYCSALRFLNEGVMNAVAASLPPRVAHCRSKDVAKILWSFGTLNYKPPNA
             440       450       460       470       480       490 

     450       460         470       480       490         500     
KIAA18 DEFLGTCVQHLNSYLGILD--PFILVFLGFSLATLEYFPEDLLKAIFNIKF--LARLDSQ
       .:: .. .....  .  ..  :  :    ..:: ::::: .:.   ..  :  ::.  ..
KIAA17 EEFYSSLISEIHRKMPEFNQYPEHLPTCLLGLAFLEYFPVELIDFALSPGFVRLAQERTK
             500       510       520       530       540       550 

         510       520       530       540               550       
KIAA18 LEILSPSRSARVQFHLMELNRSVCLECPEFQIPWFHDRFCQQYN--------KGIGGMDG
       ...:.         .:. :. .: .:::...   .  .. :. .        : ...   
KIAA17 FDLLK---------ELYTLDGTVGIECPDYRGNRLSTHLQQEGSELLWYLAEKDMNSKPE
                      560       570       580       590       600  

       560       570       580       590       600            610  
KIAA18 TQQQIFKMLAEVLGGINCVKASVLTPYYHKVDFECILDKRKKPLPYG-----SHNIALGQ
         . .: .:  .::: . ::  .. :. .. :.:  ::   ::::..     ..:.:  .
KIAA17 FLETVF-LLETMLGGPQYVKHHMILPHTRSSDLEVQLDVNLKPLPFNREATPAENVAKLR
             610       620       630       640       650       660 

            620       630                     640          650     
KIAA18 LPEMPWESNIEIVGSRLP--------------PGAERIALEFLDSKAMP---WESNI---
       : ..    . ..... :               :: . . ::  .. :.:   .  :.   
KIAA17 LEHVGVSLTDDLMNKLLKGKARGHFQGKTESEPGQQPMELE--NKAAVPLGGFLCNVADK
             670       680       690       700         710         

                660             670       680       690       700  
KIAA18 ----EIVGSRLPPGA------ERIALEFLDSKALCRNIPHMKGKSAMKKRHLEILGYRVI
           :..:  : :.:       ..:..: . .  : .   . :   ::.:.:  :::::.
KIAA17 SGAMEMAG--LCPAACMQTPRMKLAVQFTNRNQYCYGSRDLLGLHNMKRRQLARLGYRVV
     720         730       740       750       760       770       

            710       720       730      
KIAA18 QISQFEWNSMALSTKDARMDYLRECIFGEVKSCL
       ..: .::  .   :.  .. .:.: .:       
KIAA17 ELSYWEWLPLLKRTRLEKLAFLHEKVFTSAL   
       780       790       800           




736 residues in 1 query   sequences
1986769 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:17:31 2008 done: Thu Dec 18 15:17:32 2008
 Total Scan time:  0.570 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]