hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13091871/chunk_1/iprscan-20080502-13091871.nocrc
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Query sequence: KIAA1800
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08368.2.fs FAST kinase-like protein, subdomain 2          144.4    4.7e-42   1
PF08368.2.ls FAST kinase-like protein, subdomain 2          146.3    7.4e-41   1
PF06743.5.ls FAST kinase-like protein, subdomain 1          119.3      1e-32   1
PF06743.5.fs FAST kinase-like protein, subdomain 1          117.3    4.1e-32   1
PF08373.1.ls RAP domain                                      81.8      2e-21   1
PF08373.1.fs RAP domain                                      79.9    3.3e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF06743.5.fs   1/1     432   502 ..     1    75 []   117.3  4.1e-32
PF06743.5.ls   1/1     432   502 ..     1    75 []   119.3    1e-32
PF08368.2.fs   1/1     516   602 ..     1    95 []   144.4  4.7e-42
PF08368.2.ls   1/1     516   602 ..     1    95 []   146.3  7.4e-41
PF08373.1.fs   1/1     668   727 ..     1    70 []    79.9  3.3e-21
PF08373.1.ls   1/1     668   727 ..     1    70 []    81.8    2e-21

Alignments of top-scoring domains:
PF06743.5.fs: domain 1 of 1, from 432 to 502: score 117.3, E = 4.1e-32
                   *->vaalLlpFgrLNYkykPpnkeeFfsklvqkLlreLhtlsqYPeslln
                      + a+++pF++LNY+  Pp+++eF++ +vq+L+++L++l+  P  l++
    KIAA1800   432    IPAIIRPFSVLNYD--PPQRDEFLGTCVQHLNSYLGILD--PFILVF 474  

                   lvwSLclleyfPeellnkVlspdFlqrL<-*
                   l++SL+ leyfPe+ll+++++++Fl+rL   
    KIAA1800   475 LGFSLATLEYFPEDLLKAIFNIKFLARL    502  

PF06743.5.ls: domain 1 of 1, from 432 to 502: score 119.3, E = 1e-32
                   *->vaalLlpFgrLNYkykPpnkeeFfsklvqkLlreLhtlsqYPeslln
                      + a+++pF++LNY+  Pp+++eF++ +vq+L+++L++l+  P  l++
    KIAA1800   432    IPAIIRPFSVLNYD--PPQRDEFLGTCVQHLNSYLGILD--PFILVF 474  

                   lvwSLclleyfPeellnkVlspdFlqrL<-*
                   l++SL+ leyfPe+ll+++++++Fl+rL   
    KIAA1800   475 LGFSLATLEYFPEDLLKAIFNIKFLARL    502  

PF08368.2.fs: domain 1 of 1, from 516 to 602: score 144.4, E = 4.7e-42
                   *->rvrkkLlqLnaavkLEcPeYkgplLptryqvpqfpqplpkkrtplDs
                      rv+++L++Ln+ v+LEcPe+++p++++r++++++  + ++ ++++  
    KIAA1800   516    RVQFHLMELNRSVCLECPEFQIPWFHDRFCQQYN--KGIGGMDGT-- 558  

                   ssqkellevyLLkeLLGgeqyfkhsvttPygytiDfEvvLDkngkpLP<-
                     q++++++  L+e+LGg++++k sv+tPy++ +DfE++LDk++kpLP  
    KIAA1800   559 --QQQIFKM--LAEVLGGINCVKASVLTPYYHKVDFECILDKRKKPLP   602  

                   *
                    
    KIAA1800     -   -    

PF08368.2.ls: domain 1 of 1, from 516 to 602: score 146.3, E = 7.4e-41
                   *->rvrkkLlqLnaavkLEcPeYkgplLptryqvpqfpqplpkkrtplDs
                      rv+++L++Ln+ v+LEcPe+++p++++r++++++  + ++ ++++  
    KIAA1800   516    RVQFHLMELNRSVCLECPEFQIPWFHDRFCQQYN--KGIGGMDGT-- 558  

                   ssqkellevyLLkeLLGgeqyfkhsvttPygytiDfEvvLDkngkpLP<-
                     q++++++  L+e+LGg++++k sv+tPy++ +DfE++LDk++kpLP  
    KIAA1800   559 --QQQIFKM--LAEVLGGINCVKASVLTPYYHKVDFECILDKRKKPLP   602  

                   *
                    
    KIAA1800     -   -    

PF08373.1.fs: domain 1 of 1, from 668 to 727: score 79.9, E = 3.3e-21
                   *->IeidGpshfyrLinqanskslkydlintgntklKkRlLsalGykVIs
                      +e+++  + +r     n  ++      +g++++KkR+L+ lGy+VI+
    KIAA1800   668    LEFLDSKALCR-----NIPHM------KGKSAMKKRHLEILGYRVIQ 703  

                   IpyyEWnkm.lktelqKkeYlkkk<-*
                   I+ +EWn+m l+t++++++Yl++    
    KIAA1800   704 ISQFEWNSMaLSTKDARMDYLREC    727  

PF08373.1.ls: domain 1 of 1, from 668 to 727: score 81.8, E = 2e-21
                   *->IeidGpshfyrLinqanskslkydlintgntklKkRlLsalGykVIs
                      +e+++  + +r     n  ++      +g++++KkR+L+ lGy+VI+
    KIAA1800   668    LEFLDSKALCR-----NIPHM------KGKSAMKKRHLEILGYRVIQ 703  

                   IpyyEWnkm.lktelqKkeYlkkk<-*
                   I+ +EWn+m l+t++++++Yl++    
    KIAA1800   704 ISQFEWNSMaLSTKDARMDYLREC    727  

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