hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13105951/chunk_1/iprscan-20080502-13105951.nocrc
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Query sequence: KIAA1801
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                             85.0    2.2e-22  11
PF00560.23.fs Leucine Rich Repeat                             66.0    5.4e-17  11
PF00612.17.ls IQ calmodulin-binding motif                     15.9       0.14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00612.17.ls   1/1     175   195 ..     1    21 []    15.9     0.14
PF00560.23.fs   1/11    710   730 ..     1    24 []    11.2    0.051
PF00560.23.ls   1/11    710   730 ..     1    24 []    13.0     0.96
PF00560.23.ls   6/11    883   903 ..     1    24 []     8.9      5.6
PF00560.23.ls   7/11    905   925 ..     1    24 []    11.6      1.8
PF00560.23.ls   8/11    927   947 ..     1    24 []     8.2      7.7
PF00560.23.ls  10/11    973   997 ..     1    24 []    10.3      3.1

Alignments of top-scoring domains:
PF00612.17.ls: domain 1 of 1, from 175 to 195: score 15.9, E = 0.14
                   *->rraaikIQaawRGylaRkryk<-*
                        aa+kIQa +++++a ++y    
    KIAA1801   175    NNAAVKIQAKYKAFVAYQKYG    195  

PF00560.23.fs: domain 1 of 11, from 710 to 730: score 11.2, E = 0.051
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      nL+ L+L++C  +lt sl+s l+n+   
    KIAA1801   710    NLQFLSLRRC--GLT-SLHS-LsNC    730  

PF00560.23.ls: domain 1 of 11, from 710 to 730: score 13.0, E = 0.96
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      nL+ L+L++C  +lt sl+s l+n+   
    KIAA1801   710    NLQFLSLRRC--GLT-SLHS-LsNC    730  

PF00560.23.ls: domain 6 of 11, from 883 to 903: score 8.9, E = 5.6
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      ++ +Ld s+ N +lt +++  ++n+   
    KIAA1801   883    TIVYLDCSH-N-HLT-DVEG-VeNC    903  

PF00560.23.ls: domain 7 of 11, from 905 to 925: score 11.6, E = 1.8
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                       L++L L+g N  l+ +lps l+nl   
    KIAA1801   905    LLQILKLQG-N-YLS-ELPS-LeNL    925  

PF00560.23.ls: domain 8 of 11, from 927 to 947: score 8.2, E = 7.7
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                       L+eL+L++ N s++ ++++ +++    
    KIAA1801   927    LLRELHLDD-N-SIS-TVEA-FsSY    947  

PF00560.23.ls: domain 10 of 11, from 973 to 997: score 10.3, E = 3.1
                   *->nLeeLdLsgCNpsltgs....lpssl.nl<-*
                      +Le+Ld+s+ N  l+ + ++++   ++ +   
    KIAA1801   973    SLEKLDVSH-N-CLS-DlksaIKW-FdAC    997  

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