hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13123768/chunk_1/iprscan-20080502-13123768.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1802 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 50.8 4.1e-12 4 PF00096.16.fs Zinc finger, C2H2 type 43.0 9.7e-10 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 3/4 747 769 .. 1 24 [] 24.0 9.8e-05 PF00096.16.ls 3/4 747 769 .. 1 24 [] 26.0 0.00013 Alignments of top-scoring domains: PF00096.16.fs: domain 3 of 4, from 747 to 769: score 24.0, E = 9.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F s Lk+H H KIAA1802 747 YKCT-ICGKAFLLESLLKNHVAAH 769 PF00096.16.ls: domain 3 of 4, from 747 to 769: score 26.0, E = 0.00013 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F s Lk+H H KIAA1802 747 YKCT-ICGKAFLLESLLKNHVAAH 769 //