# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fk00014.fasta.huge -Q ../query/KIAA1805.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1805, 534 aa
 vs ./tmplib.25089 library

1986971 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.8317+/-0.00729; mu= 20.0707+/- 0.500
 mean_var=200.0451+/-50.043, 0's: 0 Z-trim: 7  B-trim: 108 in 1/39
 Lambda= 0.090680

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1196  ( 851 res)   fg01776                     ( 851) 1271 179.0 1.2e-45


>>KIAA1196  ( 851 res)   fg01776                          (851 aa)
 initn: 1068 init1: 626 opt: 1271  Z-score: 911.4  bits: 179.0 E(): 1.2e-45
Smith-Waterman score: 1271;  42.008% identity (67.828% similar) in 488 aa overlap (6-482:342-820)

                                        10        20        30     
KIAA18                          QCSIKDNSFQYTIPHDDSLSGSSSASSCEPVSDFP
                                     :.:     : .   .:  . ..  :.:   
KIAA11 CPIPPKQARPENGEYGPSSMGQSSAFQLSADTSSGSLSPGSRPSGGMEALKAAGPASPPE
             320       330       340       350       360       370 

          40        50        60        70        80        90     
KIAA18 ASFRKSTYWMKMRRIKPAATSHVEGSGGVSAKGKRKPRQEEDEDYREFPQKKHKLYGRKQ
        . ... .  :..  :  .  .   ::  . ::  :    ::.  :   .::..  : ..
KIAA11 EDPERTKHRRKQKTPKKFTGEQPSISGTFGLKGLVKA---EDKA-RVHRSKKQEGPGPED
             380       390       400          410        420       

          100       110           120       130       140       150
KIAA18 -RPKTQPNPKSQARRIRKEPPVYAA----GSLEEQWYLEIVDKGSVSCPTCQAVGRKTIE
        : :.   : .    . :: :. .:    :. ::::   : ..: . ::::..: :::. 
KIAA11 ARKKVPAAPIT----VSKEAPAPVAHPAPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLV
       430           440       450       460       470       480   

              160         170       180       190       200        
KIAA18 GLKKHMENCK--QEMFTCHHCGKQLRSLAGMKYHVMANHNSLPILKAGDEIDEPSERERL
       ::::::: :.  :. . :.:: ::..: ::..::.::.:.. :    ..:  :  :::::
KIAA11 GLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAEASEGGEQEERERL
           490       500       510       520       530       540   

      210       220       230       240       250       260        
KIAA18 RTVLKRLGKLRCMRESCSSSFTSIMGYLYHVRKCGKGAAELEKMTLKCHHCGKPYRSKAG
       : :::..:.::: .:.:...:.:.::: :: :.:::   :... .. : :::: ::::::
KIAA11 RKVLKQMGRLRCPQEGCGAAFSSLMGYQYHQRRCGKPPCEVDSPSFPCTHCGKTYRSKAG
           550       560       570       580       590       600   

      270        280       290       300       310       320       
KIAA18 LAYHLRSEH-GPISFFPESGQPECLKEMNLESKSGGRVQRRSAKIAVYHLQELASAELAK
         ::.:::: .:    : . .::    ...:   .:::.: ::..::.::::.:  :::.
KIAA11 HDYHVRSEHTAPPPEEPTDKSPEAEDPLGVERTPSGRVRRTSAQVAVFHLQEIAEDELAR
           610       620       630       640       650       660   

       330       340       350       360       370       380       
KIAA18 EWPKRKVLQDLVPDDRKLKYTRPGLPTFSQEVLHKWKTDIKKYHRIQCPNQGCEAVYSSV
       .: ::.. .::::.  .:.::::::::.. ..:. ::...:.  ...:::. :::.::::
KIAA11 DWTKRRMKDDLVPETARLNYTRPGLPTLNPQLLEAWKNEVKEKGHVNCPNDCCEAIYSSV
           670       680       690       700       710       720   

       390       400       410       420       430          440    
KIAA18 SGLKAHLGSCTLGNFVAGKYKCLLCQKEFVSESGVKYHINSVHAEDWFVVN---PTTTKS
       :::::::.::. :  .::::.:::: ::: ::::::::: ..:::.:: ..   :   .:
KIAA11 SGLKAHLASCSKGAHLAGKYRCLLCPKEFSSESGVKYHILKTHAENWFRTSADPPPKHRS
           730       740       750       760       770       780   

          450       460       470       480       490       500    
KIAA18 FEKLMKIKQRQQEEEKRRQQHRSRRSLRRRQQPGIELPETELSLRVGKDQRRNNEELVVS
        ..:.  :.....    ... :. .  :  ..:  .::                      
KIAA11 QDSLVPKKEKKKNLAGGKKRGRKPKE-RTPEEPVAKLPPRRDDWPPGCRDKGARGSTGRK
           790       800        810       820       830       840  

          510       520       530    
KIAA18 ASCKEPEQEPVPAQFQKVKPPKTNHKRGRK
                                     
KIAA11 VGVSKAPEK                     
            850                      




534 residues in 1 query   sequences
1986971 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:17:43 2008 done: Thu Dec 18 15:17:43 2008
 Total Scan time:  0.460 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]