hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13192581/chunk_1/iprscan-20080502-13192581.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1806 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 284.4 8.8e-81 10 SM00349 113.7 2.1e-29 1 SM00614 23.2 0.0077 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 19 79 .. 1 62 [] 113.7 2.1e-29 SM00355 1/10 182 204 .. 1 23 [] 27.0 0.0026 SM00614 1/2 192 235 .. 1 57 [] 4.4 1.1 SM00355 2/10 210 232 .. 1 23 [] 29.8 0.00037 SM00355 3/10 238 260 .. 1 23 [] 28.2 0.0011 SM00355 4/10 266 288 .. 1 23 [] 31.8 9.6e-05 SM00355 5/10 294 316 .. 1 23 [] 29.4 0.00049 SM00355 6/10 322 344 .. 1 23 [] 28.7 0.00081 SM00614 2/2 331 375 .. 1 57 [] 18.8 0.025 SM00355 7/10 350 372 .. 1 23 [] 25.3 0.0084 SM00355 8/10 378 400 .. 1 23 [] 29.5 0.00045 SM00355 9/10 406 428 .. 1 23 [] 27.6 0.0017 SM00355 10/10 434 456 .. 1 23 [] 27.0 0.0026 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 19 to 79: score 113.7, E = 2.1e-29 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk VtF DVAV F++EEW LD++Qr LYRdVMlENY+nL+S+ q++k KIAA1806 19 VTFADVAVVFTPEEWVFLDSTQRSLYRDVMLENYRNLASVA-DQLCK 64 pdliskLEqgeEpwi<-* p +s LE++ E+w+ KIAA1806 65 PNALSYLEERGEQWT 79 SM00355: domain 1 of 10, from 182 to 204: score 27.0, E = 0.0026 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ C ksf+ ++L+rH ++H KIAA1806 182 YACNK-CEKSFRYSsDLIRHEKTH 204 SM00614: domain 1 of 2, from 192 to 235: score 4.4, E = 1.1 *->kkrSkvWkhFtkiekkdngkrvetrAkCkyCgkklsysskgGTsnLr + S+ +h + ++ + + C Cg+ ++ys snLr KIAA1806 192 RYSSDLIRHEKT--HTAEKC-----FDCQECGQAFKYS-----SNLR 226 rHLrrkHpar<-* rH+r +H + KIAA1806 227 RHMR-THTGE 235 SM00355: domain 2 of 10, from 210 to 232: score 29.8, E = 0.00037 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cg+ f+ ++L+rHmr+H KIAA1806 210 FDCQE-CGQAFKYSsNLRRHMRTH 232 SM00355: domain 3 of 10, from 238 to 260: score 28.2, E = 0.0011 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk+f++ +L+ H+r H KIAA1806 238 FECSQ-CGKTFTRNfNLILHQRNH 260 SM00355: domain 4 of 10, from 266 to 288: score 31.8, E = 9.6e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cgk f+++++L+ H+r+H KIAA1806 266 YECKD-CGKAFNQPsSLRSHVRTH 288 SM00355: domain 5 of 10, from 294 to 316: score 29.4, E = 0.00049 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk f+ +++Lk H+r+H KIAA1806 294 FECSQ-CGKAFREHsSLKTHLRTH 316 SM00355: domain 6 of 10, from 322 to 344: score 28.7, E = 0.00081 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f++ ++L+ H r+H KIAA1806 322 YECNQ-CGKPFRTStHLNVHKRIH 344 SM00614: domain 2 of 2, from 331 to 375: score 18.8, E = 0.025 *->kkrSkvWkhFtkiekkdngkrvetrAkCkyCgkklsysskgGTsnLr ++S++ +++ +i + +C +Cg++ls+ s+L+ KIAA1806 331 FRTSTHLNVHKRIHTGE------KLYECATCGQVLSRL-----STLK 366 rHLrrkHpar<-* H+r +H + KIAA1806 367 SHMR-THTGE 375 SM00355: domain 7 of 10, from 350 to 372: score 25.3, E = 0.0084 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C Cg++ s+ + Lk Hmr+H KIAA1806 350 YECAT-CGQVLSRLsTLKSHMRTH 372 SM00355: domain 8 of 10, from 378 to 400: score 29.5, E = 0.00045 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cg+ fs +++L++H r+H KIAA1806 378 YVCQE-CGRAFSEPsSLRKHARTH 400 SM00355: domain 9 of 10, from 406 to 428: score 27.6, E = 0.0017 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cg+ f + ++L+ H+r+H KIAA1806 406 YACQE-CGRAFGQSsHLIVHVRTH 428 SM00355: domain 10 of 10, from 434 to 456: score 27.0, E = 0.0026 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C k f++ ++L+ H r+H KIAA1806 434 YQCNQ-CEKAFRHSsSLTVHKRTH 456 //