hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13294454/chunk_1/iprscan-20080502-13294454.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1812 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.fs Cadherin domain 456.7 2.7e-134 8 PF00028.8.ls Cadherin domain 455.7 5.6e-134 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00028.8.fs 2/8 56 143 .. 1 107 [] 84.9 1e-23 PF00028.8.ls 1/6 56 143 .. 1 107 [] 86.7 6.8e-23 PF00028.8.ls 2/6 157 253 .. 1 107 [] 82.2 1.5e-21 PF00028.8.fs 3/8 157 253 .. 1 107 [] 80.3 2e-22 PF00028.8.ls 3/6 267 360 .. 1 107 [] 67.6 3.8e-17 PF00028.8.fs 4/8 267 360 .. 1 107 [] 65.7 3.1e-18 PF00028.8.ls 4/6 374 470 .. 1 107 [] 51.9 1.9e-12 PF00028.8.fs 5/8 374 470 .. 1 107 [] 50.1 9.5e-14 PF00028.8.fs 6/8 486 577 .. 1 107 [] 92.5 6.7e-26 PF00028.8.ls 5/6 486 577 .. 1 107 [] 94.3 3.4e-25 PF00028.8.ls 6/6 591 682 .. 1 107 [] 73.0 9e-19 PF00028.8.fs 7/8 591 682 .. 1 107 [] 71.1 8.9e-20 Alignments of top-scoring domains: PF00028.8.fs: domain 2 of 8, from 56 to 143: score 84.9, E = 1e-23 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y++s+ En+ vGt+vltv AtD D g+ g + Y+++ ++ + F+ KIAA1812 56 YNISLYENVTVGTSVLTVLATDND--AGTFGEVNYFFSDDP--DRFS 98 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +d+dtG i + ++LD+E i ++++Lt++A+D++ + + KIAA1812 99 LDKDTGL----IMLIARLDYELI--QRFTLTIIARDGG---------GEE 133 statvtitVl<-* +t++v+i+Vl KIAA1812 134 TTGRVRINVL 143 PF00028.8.ls: domain 1 of 6, from 56 to 143: score 86.7, E = 6.8e-23 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y++s+ En+ vGt+vltv AtD D g+ g + Y+++ ++ + F+ KIAA1812 56 YNISLYENVTVGTSVLTVLATDND--AGTFGEVNYFFSDDP--DRFS 98 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +d+dtG i + ++LD+E i ++++Lt++A+D++ + + KIAA1812 99 LDKDTGL----IMLIARLDYELI--QRFTLTIIARDGG---------GEE 133 statvtitVl<-* +t++v+i+Vl KIAA1812 134 TTGRVRINVL 143 PF00028.8.ls: domain 2 of 6, from 157 to 253: score 82.2, E = 1.5e-21 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp.ggwF y++ ++En+p+ t + +++AtD D ++pN +i+Ysi++ + g F KIAA1812 157 YVGALRENEPSVTQLVRLRATDED--SPPNNQITYSIVSASAfGSYF 201 rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl I + G g+is+ +pLD+E+i+ng Ltv+A+Da g ppl KIAA1812 202 DISLYEGY--GVISVSRPLDYEQISNGLIYLTVMAMDA-------GNPPL 242 sstatvtitVl<-* st++vti+V KIAA1812 243 NSTVPVTIEVF 253 PF00028.8.fs: domain 3 of 8, from 157 to 253: score 80.3, E = 2e-22 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp.ggwF y++ ++En+p+ t + +++AtD D ++pN +i+Ysi++ + g F KIAA1812 157 YVGALRENEPSVTQLVRLRATDED--SPPNNQITYSIVSASAfGSYF 201 rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl I + G g+is+ +pLD+E+i+ng Ltv+A+Da g ppl KIAA1812 202 DISLYEGY--GVISVSRPLDYEQISNGLIYLTVMAMDA-------GNPPL 242 sstatvtitVl<-* st++vti+V KIAA1812 243 NSTVPVTIEVF 253 PF00028.8.ls: domain 3 of 6, from 267 to 360: score 67.6, E = 3.8e-17 *->ysasvpEnapvGtevltvtAtDaDd.PlgpNgrirYsilggnpggwF y +sv En G +vl ++AtD D + + ++i Ys+ g +F KIAA1812 267 YFVSVVENIMAGATVLFLNATDLDRsREYGQESIIYSLEGST---QF 310 rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl rI+ ++G+ i+tt LDRE+ +eY L+v+A+D++ g + KIAA1812 311 RINARSGE----ITTTSLLDRETK--SEYILIVRAVDGG-----VGHNQK 349 sstatvtitVl<-* ++ atv+it+l KIAA1812 350 TGIATVNITLL 360 PF00028.8.fs: domain 4 of 8, from 267 to 360: score 65.7, E = 3.1e-18 *->ysasvpEnapvGtevltvtAtDaDd.PlgpNgrirYsilggnpggwF y +sv En G +vl ++AtD D + + ++i Ys+ g +F KIAA1812 267 YFVSVVENIMAGATVLFLNATDLDRsREYGQESIIYSLEGST---QF 310 rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl rI+ ++G+ i+tt LDRE+ +eY L+v+A+D++ g + KIAA1812 311 RINARSGE----ITTTSLLDRETK--SEYILIVRAVDGG-----VGHNQK 349 sstatvtitVl<-* ++ atv+it+l KIAA1812 350 TGIATVNITLL 360 PF00028.8.ls: domain 4 of 6, from 374 to 470: score 51.9, E = 1.9e-12 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y + + E +p+ + v+tv A+D+D lg Ng ++Ysi ++n + + KIAA1812 374 YYINLVEMTPPDSDVTTVVAVDPD--LGENGTLVYSIQPPN--KFYS 416 IdpdtGdnegiisttkp.LDREeif....ngeYeLtveAtDadpllasgg +++ tG i+tt LDRE + +++ + + ++v++tD+ g KIAA1812 417 LNSTTGK----IRTTHAmLDRENPDpheaELMRKIVVSVTDC-------G 455 gpplsstatvtitVl<-* ppl +t + t+ V KIAA1812 456 RPPLKATSSATVFVN 470 PF00028.8.fs: domain 5 of 8, from 374 to 470: score 50.1, E = 9.5e-14 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y + + E +p+ + v+tv A+D+D lg Ng ++Ysi ++n + + KIAA1812 374 YYINLVEMTPPDSDVTTVVAVDPD--LGENGTLVYSIQPPN--KFYS 416 IdpdtGdnegiisttkp.LDREeif....ngeYeLtveAtDadpllasgg +++ tG i+tt LDRE + +++ + + ++v++tD+ g KIAA1812 417 LNSTTGK----IRTTHAmLDRENPDpheaELMRKIVVSVTDC-------G 455 gpplsstatvtitVl<-* ppl +t + t+ V KIAA1812 456 RPPLKATSSATVFVN 470 PF00028.8.fs: domain 6 of 8, from 486 to 577: score 92.5, E = 6.7e-26 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++a+v E+ p G ++ +v A+D D +g+Ng ++Y++ g p+ F KIAA1812 486 FVAEVLEGIPAGVSIYQVVAIDLD--EGLNGLVSYRMPVGMPRMDFL 530 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls I++ +G+ + tt +LDRE i eY L v+A+Da g+p +s KIAA1812 531 INSSSGV----VVTTTELDRERI--AEYQLRVVASDA-------GTPTKS 567 statvtitVl<-* st t+ti+Vl KIAA1812 568 STSTLTIHVL 577 PF00028.8.ls: domain 5 of 6, from 486 to 577: score 94.3, E = 3.4e-25 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++a+v E+ p G ++ +v A+D D +g+Ng ++Y++ g p+ F KIAA1812 486 FVAEVLEGIPAGVSIYQVVAIDLD--EGLNGLVSYRMPVGMPRMDFL 530 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls I++ +G+ + tt +LDRE i eY L v+A+Da g+p +s KIAA1812 531 INSSSGV----VVTTTELDRERI--AEYQLRVVASDA-------GTPTKS 567 statvtitVl<-* st t+ti+Vl KIAA1812 568 STSTLTIHVL 577 PF00028.8.ls: domain 6 of 6, from 591 to 682: score 73.0, E = 9e-19 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y++sv+E++p+ +v ++ tD D g+N+ ++Y+i+ggn++g+F+ KIAA1812 591 YNVSVSEDVPREFRVVWLNCTDND--VGLNAELSYFITGGNVDGKFS 635 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls + ++ + ++t+ LDRE++ Y L++eA D+ g+ +++ KIAA1812 636 VGYRDAV----VRTVVGLDRETT--AAYMLILEAIDN-------GPVGKR 672 statvtitVl<-* t+t t+ V+ KIAA1812 673 HTGTATVFVT 682 PF00028.8.fs: domain 7 of 8, from 591 to 682: score 71.1, E = 8.9e-20 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y++sv+E++p+ +v ++ tD D g+N+ ++Y+i+ggn++g+F+ KIAA1812 591 YNVSVSEDVPREFRVVWLNCTDND--VGLNAELSYFITGGNVDGKFS 635 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls + ++ + ++t+ LDRE++ Y L++eA D+ g+ +++ KIAA1812 636 VGYRDAV----VRTVVGLDRETT--AAYMLILEAIDN-------GPVGKR 672 statvtitVl<-* t+t t+ V+ KIAA1812 673 HTGTATVFVT 682 //