hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13294454/chunk_1/iprscan-20080502-13294454.nocrc
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Query sequence: KIAA1812
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 546.9   8.3e-160   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/6      73   150 ..     1   121 []    92.4  5.4e-23
SM00112    2/6     174   260 ..     1   121 []   103.2  3.1e-26
SM00112    3/6     284   367 ..     1   121 []    99.9    3e-25
SM00112    4/6     391   479 ..     1   121 []    67.5  1.6e-15
SM00112    5/6     503   584 ..     1   121 []   103.9  1.8e-26
SM00112    6/6     608   691 ..     1   121 []    80.0  2.9e-19

Alignments of top-scoring domains:
SM00112: domain 1 of 6, from 73 to 150: score 92.4, E = 5.4e-23
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils...lFsIdpetGtngpsL
                      v AtD D+g   + g+      v Y ++++++ Fs+d++tG      
    KIAA1812    73    VLATDNDAG---TFGE------VNYFFSDdpdRFSLDKDTG------ 104  

                   vkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdsspt
                       i +++  +LD+E +         +++tLt++A+DgGg         
    KIAA1812   105 ---LIMLIA--RLDYELI---------QRFTLTIIARDGGG--------- 131  

                   rksqqtpplsstatvtvtVlDvNDNaP<-*
                            ++t  v+++VlDvNDN P   
    KIAA1812   132 --------EETTGRVRINVLDVNDNVP    150  

SM00112: domain 2 of 6, from 174 to 260: score 103.2, E = 3.1e-26
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils......lFsIdpetGtng
                      ++AtD+Ds+   +N +      +tYsi+s +  +++F+I    G   
    KIAA1812   174    LRATDEDSP---PNNQ------ITYSIVSasafgsYFDISLYEG--- 208  

                   psLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
                         +++i++++pLD+E++++           Ltv A+D+G+pp    
    KIAA1812   209 ------YGVISVSRPLDYEQISN-------GLIYLTVMAMDAGNPP---- 241  

                   sptrksqqtpplsstatvtvtVlDvNDNaP<-*
                              l st++vt++V D+NDN+P   
    KIAA1812   242 -----------LNSTVPVTIEVFDENDNPP    260  

SM00112: domain 3 of 6, from 284 to 367: score 99.9, E = 3e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      ++AtD+D     e g+    e++ Ys++++++F+I++++G       
    KIAA1812   284    LNATDLDRS--REYGQ----ESIIYSLEGstQFRINARSG------- 317  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                       +ittt  LDRE++         seY L+v+A+DgG  ++       
    KIAA1812   318 ----EITTTSLLDRETK---------SEYILIVRAVDGGVGHNQ------ 348  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          +++ atv++t+lD+NDN P   
    KIAA1812   349 -------KTGIATVNITLLDINDNHP    367  

SM00112: domain 4 of 6, from 391 to 479: score 67.5, E = 1.6e-15
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils...lFsIdpetGtngpsL
                      v+A+D+D g   eNg       ++Ysi +++++ s++++tG      
    KIAA1812   391    VVAVDPDLG---ENGT------LVYSIQPpnkFYSLNSTTG------ 422  

                   vkleiiittt.kpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssp
                         i+tt++ LDRE+      +       ++v +tD G pp      
    KIAA1812   423 -----KIRTThAMLDRENPDPHEAE---LMRKIVVSVTDCGRPPLK---- 460  

                   trksqqtpplsstatvtvtVlDvNDNaP<-*
                             +s+atv v++lD NDN P   
    KIAA1812   461 ---------ATSSATVFVNLLDLNDNDP    479  

SM00112: domain 5 of 6, from 503 to 584: score 103.9, E = 1.8e-26
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      v+A+D+D+g    Ng       v+Y++  + ++  F I++++G    
    KIAA1812   503    VVAIDLDEG---LNGL------VSYRMPVgmprmDFLINSSSG---- 536  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          +++tt +LDRE +         +eY+L+v+A+D+G+p      
    KIAA1812   537 -------VVVTTTELDRERI---------AEYQLRVVASDAGTPT----- 565  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             +sst+t+t++VlDvND  P   
    KIAA1812   566 ----------KSSTSTLTIHVLDVNDETP    584  

SM00112: domain 6 of 6, from 608 to 691: score 80.0, E = 2.9e-19
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      ++ tD D g    N++      ++Y i++++ +++Fs+  +      
    KIAA1812   608    LNCTDNDVG---LNAE------LSYFITGgnvdgKFSVGYRDA---- 641  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          +++t+  LDRE++         + Y L+ eA D+G+  ++   
    KIAA1812   642 -------VVRTVVGLDRETT---------AAYMLILEAIDNGPVGKR--- 672  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             +++tatv vtVlDvNDN+P   
    KIAA1812   673 ----------HTGTATVFVTVLDVNDNRP    691  

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