HUGE

Gene/Protein Characteristic Table for KIAA1815

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Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04912
Accession No. :	AB058718
Description :
HUGO Gene Name :
Clone Name :	ha00534 [Vector Info]
Source :	Myeloblast cell line (KG-1)
Note :	We replaced pj01758, former representative clones for KIAA1815 with ha00534. (2002/12/27)

Features of the cloned DNA sequence	Description

Length: 5214 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2568 bp

Genome contig ID gi89161216r_5674573
PolyA signal sequence
(AATAAA,-17)
+----*----+----*----+----*----+----
GCCTTACAATGTTACTGAAATAAACTGTTTAATAT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ACTGGTTGGTATCTTTTTAACTGAAAAACAGATCTGTGTTCTTCTGTATC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 9 r 5774573 5822958 15 99.5 Perfect prediction

Features of the protein sequence	Description

Length: 881 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q7Z2K6	100.0	Endoplasmic ret...	Homo sapiens
XP_001924252	90.8	endoplasmic ret...	Sus scrofa
XP_001493226	91.8	endoplasmic ret...	Equus caballus
Q6UPR8	86.0	Endoplasmic ret...	Rattus norvegicus
Q3UVK0	85.5	Endoplasmic ret...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR007484 175 346 PF04389 Peptidase M28

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR007484	175	346	PF04389	Peptidase M28

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 50 AALGLALYLIALRTLVQLSLQQL 72 PRIMARY 23

2 374 GNMVFFDVLGLFVIAY 389 PRIMARY 16

3 395 SIINYMVVMGVVLYLG 410 PRIMARY 16

4 432 GITLISWFTSLVTVLIIAVFISL 454 PRIMARY 23

5 466 YVSVCLYGTATVAKIILIHTLA 487 PRIMARY 22

6 498 QYLGEVFFDISLFVHCCFLVTLT 520 PRIMARY 23

7 524 LCSAFISAVWVAFPLLTKLCVHK 546 PRIMARY 23

8 559 AFYLLGMFIPYLYALYLIWAVFE 581 PRIMARY 23

9 596 PDVVLASILAGCTMILSSYFINF 618 SECONDARY 23

10 628 TMLTLTLVCAITFLLVCSGTFFP 650 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	50	AALGLALYLIALRTLVQLSLQQL	72	PRIMARY	23
2	374	GNMVFFDVLGLFVIAY	389	PRIMARY	16
3	395	SIINYMVVMGVVLYLG	410	PRIMARY	16
4	432	GITLISWFTSLVTVLIIAVFISL	454	PRIMARY	23
5	466	YVSVCLYGTATVAKIILIHTLA	487	PRIMARY	22
6	498	QYLGEVFFDISLFVHCCFLVTLT	520	PRIMARY	23
7	524	LCSAFISAVWVAFPLLTKLCVHK	546	PRIMARY	23
8	559	AFYLLGMFIPYLYALYLIWAVFE	581	PRIMARY	23
9	596	PDVVLASILAGCTMILSSYFINF	618	SECONDARY	23
10	628	TMLTLTLVCAITFLLVCSGTFFP	650	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TTCCCTGTGTAAACCATTGTC

Primer_r
: CAAACGGTATGCTTAACAGAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 9

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2568 bp
Genome contig ID	gi89161216r_5674573
PolyA signal sequence (AATAAA,-17)	+--------+--------+----*----+---- GCCTTACAATGTTACTGAAATAAACTGTTTAATAT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ACTGGTTGGTATCTTTTTAACTGAAAAACAGATCTGTGTTCTTCTGTATC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	9	r	5774573	5822958	15	99.5	Perfect prediction

Primer_f	: TTCCCTGTGTAAACCATTGTC
Primer_r	: CAAACGGTATGCTTAACAGAG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1815

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information