hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13585463/chunk_1/iprscan-20080502-13585463.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1829 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 332.0 9.2e-97 11 PF00096.16.fs Zinc finger, C2H2 type 310.4 3e-90 12 PF01096.9.fs Transcription factor S-II (TFIIS) 57.1 5.8e-17 11 PF01286.9.fs XPA protein N-terminal 40.3 9.9e-11 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 2/12 250 272 .. 1 24 [] 26.9 1.9e-05 PF00096.16.ls 1/11 250 272 .. 1 24 [] 28.8 1.7e-05 PF00096.16.ls 2/11 278 300 .. 1 24 [] 35.2 2.1e-07 PF00096.16.fs 3/12 278 300 .. 1 24 [] 33.2 5e-07 PF00096.16.ls 3/11 306 328 .. 1 24 [] 30.0 7.7e-06 PF00096.16.fs 4/12 306 328 .. 1 24 [] 28.0 9.7e-06 PF00096.16.ls 4/11 334 356 .. 1 24 [] 35.6 1.6e-07 PF00096.16.fs 5/12 334 356 .. 1 24 [] 33.6 3.9e-07 PF00096.16.ls 5/11 362 384 .. 1 24 [] 34.8 2.8e-07 PF00096.16.fs 6/12 362 384 .. 1 24 [] 32.8 6.3e-07 PF00096.16.ls 6/11 390 412 .. 1 24 [] 34.8 2.7e-07 PF00096.16.fs 7/12 390 412 .. 1 24 [] 32.9 6.1e-07 PF00096.16.ls 7/11 418 440 .. 1 24 [] 26.4 9.2e-05 PF00096.16.fs 8/12 418 440 .. 1 24 [] 24.5 7.6e-05 PF00096.16.ls 8/11 446 468 .. 1 24 [] 28.5 2.1e-05 PF00096.16.fs 9/12 446 468 .. 1 24 [] 26.6 2.3e-05 PF00096.16.ls 9/11 474 496 .. 1 24 [] 27.0 6.3e-05 PF00096.16.fs 10/12 474 496 .. 1 24 [] 25.0 5.5e-05 PF00096.16.fs 11/12 502 524 .. 1 24 [] 24.6 6.8e-05 PF00096.16.ls 10/11 502 524 .. 1 24 [] 26.6 8.1e-05 PF00096.16.ls 11/11 530 552 .. 1 24 [] 24.2 0.00042 Alignments of top-scoring domains: PF00096.16.fs: domain 2 of 12, from 250 to 272: score 26.9, E = 1.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ dCgk+Fs+ L H+rtH KIAA1829 250 YACN-DCGKAFSHDFFLSEHQRTH 272 PF00096.16.ls: domain 1 of 11, from 250 to 272: score 28.8, E = 1.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ dCgk+Fs+ L H+rtH KIAA1829 250 YACN-DCGKAFSHDFFLSEHQRTH 272 PF00096.16.ls: domain 2 of 11, from 278 to 300: score 35.2, E = 2.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+k+F+++++L +H+r+H KIAA1829 278 YECK-ECNKAFRQSAHLAQHQRIH 300 PF00096.16.fs: domain 3 of 12, from 278 to 300: score 33.2, E = 5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+k+F+++++L +H+r+H KIAA1829 278 YECK-ECNKAFRQSAHLAQHQRIH 300 PF00096.16.ls: domain 3 of 11, from 306 to 328: score 30.0, E = 7.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+Fsr + L H+r+H KIAA1829 306 FACN-ECGKAFSRYAFLVEHQRIH 328 PF00096.16.fs: domain 4 of 12, from 306 to 328: score 28.0, E = 9.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+Fsr + L H+r+H KIAA1829 306 FACN-ECGKAFSRYAFLVEHQRIH 328 PF00096.16.ls: domain 4 of 11, from 334 to 356: score 35.6, E = 1.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+k+F+++++L++H+r+H KIAA1829 334 YECK-ECNKAFRQSAHLNQHQRIH 356 PF00096.16.fs: domain 5 of 12, from 334 to 356: score 33.6, E = 3.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+k+F+++++L++H+r+H KIAA1829 334 YECK-ECNKAFRQSAHLNQHQRIH 356 PF00096.16.ls: domain 5 of 11, from 362 to 384: score 34.8, E = 2.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fsr+ L+ H+r+H KIAA1829 362 YECN-QCGKAFSRRIALTLHQRIH 384 PF00096.16.fs: domain 6 of 12, from 362 to 384: score 32.8, E = 6.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fsr+ L+ H+r+H KIAA1829 362 YECN-QCGKAFSRRIALTLHQRIH 384 PF00096.16.ls: domain 6 of 11, from 390 to 412: score 34.8, E = 2.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F +s+L++H+r+H KIAA1829 390 FKCS-ECGKTFGYRSHLNQHQRIH 412 PF00096.16.fs: domain 7 of 12, from 390 to 412: score 32.9, E = 6.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F +s+L++H+r+H KIAA1829 390 FKCS-ECGKTFGYRSHLNQHQRIH 412 PF00096.16.ls: domain 7 of 11, from 418 to 440: score 26.4, E = 9.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk F++ s+L+rH r+H KIAA1829 418 YECI-KCGKFFRTDSQLNRHHRIH 440 PF00096.16.fs: domain 8 of 12, from 418 to 440: score 24.5, E = 7.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk F++ s+L+rH r+H KIAA1829 418 YECI-KCGKFFRTDSQLNRHHRIH 440 PF00096.16.ls: domain 8 of 11, from 446 to 468: score 28.5, E = 2.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs+ L +H+r+H KIAA1829 446 FECS-KCGKAFSDALVLIHHKRSH 468 PF00096.16.fs: domain 9 of 12, from 446 to 468: score 26.6, E = 2.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs+ L +H+r+H KIAA1829 446 FECS-KCGKAFSDALVLIHHKRSH 468 PF00096.16.ls: domain 9 of 11, from 474 to 496: score 27.0, E = 6.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs s L++H+r+H KIAA1829 474 YECN-KCGKAFSCGSYLNQHQRIH 496 PF00096.16.fs: domain 10 of 12, from 474 to 496: score 25.0, E = 5.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs s L++H+r+H KIAA1829 474 YECN-KCGKAFSCGSYLNQHQRIH 496 PF00096.16.fs: domain 11 of 12, from 502 to 524: score 24.6, E = 6.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F + +L+ H+r+H KIAA1829 502 YECS-ECGKAFHQILSLRLHQRIH 524 PF00096.16.ls: domain 10 of 11, from 502 to 524: score 26.6, E = 8.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F + +L+ H+r+H KIAA1829 502 YECS-ECGKAFHQILSLRLHQRIH 524 PF00096.16.ls: domain 11 of 11, from 530 to 552: score 24.2, E = 0.00042 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg Fs s L+rH+r+H KIAA1829 530 YKCN-ECGNNFSCVSALRRHQRIH 552 //