hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13585463/chunk_1/iprscan-20080502-13585463.nocrc
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Query sequence: KIAA1829
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 306.9    1.4e-87  11

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/11    250   272 ..     1    23 []    23.8    0.023
SM00355      2/11    278   300 ..     1    23 []    28.7  0.00078
SM00355      3/11    306   328 ..     1    23 []    27.6   0.0017
SM00355      4/11    334   356 ..     1    23 []    29.4  0.00049
SM00355      5/11    362   384 ..     1    23 []    31.1  0.00016
SM00355      6/11    390   412 ..     1    23 []    31.3  0.00013
SM00355      7/11    418   440 ..     1    23 []    26.8    0.003
SM00355      8/11    446   468 ..     1    23 []    27.3   0.0022
SM00355      9/11    474   496 ..     1    23 []    25.5   0.0072
SM00355     10/11    502   524 ..     1    23 []    29.1  0.00061
SM00355     11/11    530   552 ..     1    23 []    26.2   0.0045

Alignments of top-scoring domains:
SM00355: domain 1 of 11, from 250 to 272: score 23.8, E = 0.023
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C+  Cgk fs+   L +H+r+H   
    KIAA1829   250    YACND-CGKAFSHDfFLSEHQRTH    272  

SM00355: domain 2 of 11, from 278 to 300: score 28.7, E = 0.00078
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C+k f++  +L +H+r+H   
    KIAA1829   278    YECKE-CNKAFRQSaHLAQHQRIH    300  

SM00355: domain 3 of 11, from 306 to 328: score 27.6, E = 0.0017
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cgk fs++  L++H+r+H   
    KIAA1829   306    FACNE-CGKAFSRYaFLVEHQRIH    328  

SM00355: domain 4 of 11, from 334 to 356: score 29.4, E = 0.00049
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C+k f++  +L++H+r+H   
    KIAA1829   334    YECKE-CNKAFRQSaHLNQHQRIH    356  

SM00355: domain 5 of 11, from 362 to 384: score 31.1, E = 0.00016
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs++ aL+ H+r+H   
    KIAA1829   362    YECNQ-CGKAFSRRiALTLHQRIH    384  

SM00355: domain 6 of 11, from 390 to 412: score 31.3, E = 0.00013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk+f  +++L++H+r+H   
    KIAA1829   390    FKCSE-CGKTFGYRsHLNQHQRIH    412  

SM00355: domain 7 of 11, from 418 to 440: score 26.8, E = 0.003
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cgk f++ ++L+rH r+H   
    KIAA1829   418    YECIK-CGKFFRTDsQLNRHHRIH    440  

SM00355: domain 8 of 11, from 446 to 468: score 27.3, E = 0.0022
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk fs++  L++H r+H   
    KIAA1829   446    FECSK-CGKAFSDAlVLIHHKRSH    468  

SM00355: domain 9 of 11, from 474 to 496: score 25.5, E = 0.0072
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs  + L++H+r+H   
    KIAA1829   474    YECNK-CGKAFSCGsYLNQHQRIH    496  

SM00355: domain 10 of 11, from 502 to 524: score 29.1, E = 0.00061
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++  +L+ H+r+H   
    KIAA1829   502    YECSE-CGKAFHQIlSLRLHQRIH    524  

SM00355: domain 11 of 11, from 530 to 552: score 26.2, E = 0.0045
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cg  fs  +aL+rH+r+H   
    KIAA1829   530    YKCNE-CGNNFSCVsALRRHQRIH    552  

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