hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14085157/chunk_1/iprscan-20080502-14085157.nocrc
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Query sequence: KIAA1835
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF07834.2.fs RanGAP1 C-terminal domain                     493.2   3.1e-152   1
PF07834.2.ls RanGAP1 C-terminal domain                     495.1   7.6e-146   1
PF00560.23.ls Leucine Rich Repeat                            35.5    1.8e-07   6
PF00560.23.fs Leucine Rich Repeat                            24.4    1.3e-05   6

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00560.23.ls   2/6     149   171 ..     1    24 []    10.4      3.1
PF00560.23.ls   6/6     358   384 ..     1    24 []     9.5      4.5
PF07834.2.fs   1/1     440   622 ..     1   185 []   493.2 3.1e-152
PF07834.2.ls   1/1     440   622 ..     1   185 []   495.1 7.6e-146

Alignments of top-scoring domains:
PF00560.23.ls: domain 2 of 6, from 149 to 171: score 10.4, E = 3.1
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L eLdLs+ N  + g+  + +++ l   
    KIAA1835   149    QLVELDLSD-N-AF-GPDGVQgFeAL    171  

PF00560.23.ls: domain 6 of 6, from 358 to 384: score 9.5, E = 4.5
                   *->nLeeLdLsgCNpsltgs.....lpssl.nl<-*
                      +Le+LdL+g N  l g+++++ l++ l+++   
    KIAA1835   358    ELEKLDLNG-N-TL-GEegceqLQEVLeGF    384  

PF07834.2.fs: domain 1 of 1, from 440 to 622: score 493.2, E = 3.1e-152
                   *->GedaeekekkkekpvieekaPvlepplpsdvstFLafPSpEKLirLG
                      Ge+++++++k+++p+++e+aPvl++p+p+dvstFLafPSpEKL+rLG
    KIAA1835   440    GEKSATPSRKILDPNTGEPAPVLSSPPPADVSTFLAFPSPEKLLRLG 486  

                   pkrsaLIaQQvdvaDaeKVveaFLkVSSVYkdeaeVkaAVeetvDALmkk
                   pk+s+LIaQQ+d++D+eKVv+aFLkVSSV+kdea+V++AV+++vDALm+k
    KIAA1835   487 PKSSVLIAQQTDTSDPEKVVSAFLKVSSVFKDEATVRMAVQDAVDALMQK 536  

                   AFenssFSqSnsFitsLLVnmGLLKSEDKKvKkisvLnGpLLtLnHmVqQ
                   AF++ssF +Sn+F+t+LLV+mGLLKSED KvK+i++L+GpL++LnHmVqQ
    KIAA1835   537 AFNSSSF-NSNTFLTRLLVHMGLLKSED-KVKAIANLYGPLMALNHMVQQ 584  

                   eYFPkdlAsvLlAFVskpnavLEscasARhaLlitLyk<-*
                   +YFPk+lA++LlAFV+kpn++LEsc++ARh+Ll+tLyk   
    KIAA1835   585 DYFPKALAPLLLAFVTKPNSALESCSFARHSLLQTLYK    622  

PF07834.2.ls: domain 1 of 1, from 440 to 622: score 495.1, E = 7.6e-146
                   *->GedaeekekkkekpvieekaPvlepplpsdvstFLafPSpEKLirLG
                      Ge+++++++k+++p+++e+aPvl++p+p+dvstFLafPSpEKL+rLG
    KIAA1835   440    GEKSATPSRKILDPNTGEPAPVLSSPPPADVSTFLAFPSPEKLLRLG 486  

                   pkrsaLIaQQvdvaDaeKVveaFLkVSSVYkdeaeVkaAVeetvDALmkk
                   pk+s+LIaQQ+d++D+eKVv+aFLkVSSV+kdea+V++AV+++vDALm+k
    KIAA1835   487 PKSSVLIAQQTDTSDPEKVVSAFLKVSSVFKDEATVRMAVQDAVDALMQK 536  

                   AFenssFSqSnsFitsLLVnmGLLKSEDKKvKkisvLnGpLLtLnHmVqQ
                   AF++ssF +Sn+F+t+LLV+mGLLKSED KvK+i++L+GpL++LnHmVqQ
    KIAA1835   537 AFNSSSF-NSNTFLTRLLVHMGLLKSED-KVKAIANLYGPLMALNHMVQQ 584  

                   eYFPkdlAsvLlAFVskpnavLEscasARhaLlitLyk<-*
                   +YFPk+lA++LlAFV+kpn++LEsc++ARh+Ll+tLyk   
    KIAA1835   585 DYFPKALAPLLLAFVTKPNSALESCSFARHSLLQTLYK    622  

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