hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14103266/chunk_1/iprscan-20080502-14103266.nocrc
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Query sequence: KIAA1836
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00685                                                 435.2   3.4e-126   4
SM00239                                                  51.5    1.1e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00685    1/4      28    85 ..     1    59 []   101.8  8.1e-26
SM00685    2/4     141   198 ..     1    59 []   103.4  2.6e-26
SM00685    3/4     245   303 ..     1    59 []   119.0  5.2e-31
SM00685    4/4     397   455 ..     1    59 []   111.0  1.3e-28
SM00239    1/1     560   674 ..     1    92 []    51.5  1.1e-10

Alignments of top-scoring domains:
SM00685: domain 1 of 4, from 28 to 85: score 101.8, E = 8.1e-26
                   *->LalLeqRqeqYkqAAlqAKraGDvekArrhlRiaKqfddaikaaraG
                       alLe+R+++Y++AA++AK+aG+++kArr++R++K+++++++++r+G
    KIAA1836    28    -ALLEERIHNYREAAASAKEAGEAAKARRCERGLKTLESQLASVRRG 73   

                   rpVdlselPpPP<-*
                   r+++++e+PpP+   
    KIAA1836    74 RKINEDEIPPPV    85   

SM00685: domain 2 of 4, from 141 to 198: score 103.4, E = 2.6e-26
                   *->LalLeqRqeqYkqAAlqAKraGDvekArrhlRiaKqfddaikaaraG
                       alL++Rq++Yk+AAl+AKraG++++Ar+ +Ri K+f+++++a+++G
    KIAA1836   141    -ALLSSRQREYKVAALSAKRAGELDRARELMRIGKRFGAVLEALEKG 186  

                   rpVdlselPpPP<-*
                   +pVdls++Pp+P   
    KIAA1836   187 QPVDLSAMPPAP    198  

SM00685: domain 3 of 4, from 245 to 303: score 119.0, E = 5.2e-31
                   *->LalLeqRqeqYkqAAlqAKraGDvekArrhlRiaKqfddaikaaraG
                      L++L+qR+++Y++A +qA++ GD++kAr+h+RiaKq++dai+a+raG
    KIAA1836   245    LDALQQRLNKYREAGIQARSGGDERKARMHERIAKQYQDAIRAHRAG 291  

                   rpVdlselPpPP<-*
                   r+V+++elP+PP   
    KIAA1836   292 RKVNFAELPVPP    303  

SM00685: domain 4 of 4, from 397 to 455: score 111.0, E = 1.3e-28
                   *->LalLeqRqeqYkqAAlqAKraGDvekArrhlRiaKqfddaikaaraG
                      LalLe+R+ qY++AAlqAKr++D+e+A+++lR+aK+++++i++ar+G
    KIAA1836   397    LALLEARKLQYQRAALQAKRSQDLEQAKAYLRVAKWLEAQIIQARSG 443  

                   rpVdlselPpPP<-*
                   rpVdls++P+P+   
    KIAA1836   444 RPVDLSKVPSPL    455  

SM00239: domain 1 of 1, from 560 to 674: score 51.5, E = 1.1e-10
                   *->tLtvkiisArnLp..........DPYVkvs............kTkvv
                       +++ i+++ nLp +++ ++++ D +V+++ + +++++ +++kT vv
    KIAA1836   560    EMHLIIVRGMNLPappgvtpddlDAFVRFEfhypnsdqaqksKTAVV 606  

                   kktlsgfNPvWnEesetFeFevpp...........s.LeieVyDk.....
                   k+t+   +P++++    F++++++++++ ++  +++++++e+++k++  +
    KIAA1836   607 KNTN---SPEFDQ---LFKLNINRnhrgfkrviqsKgIKFEIFHKgsffr 650  

                   ..dfiGrvtippnnahqhsadglihlsell.ggrh.kl<-*
                   +++++G++ +               l++l+++ + ++    
    KIAA1836   651 sdKLVGTAHLK--------------LERLEnECEIrEI    674  

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