hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14121421/chunk_1/iprscan-20080502-14121421.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1837 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00801.10.fs PKD domain 49.4 1.3e-13 4 PF00801.10.ls PKD domain 37.9 3.3e-08 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00801.10.ls 2/3 254 328 .. 1 92 [] 15.0 0.037 PF00801.10.ls 3/3 340 425 .. 1 92 [] 14.4 0.042 Alignments of top-scoring domains: PF00801.10.ls: domain 2 of 3, from 254 to 328: score 15.0, E = 0.037 *->vsasaveegpsvvalgetVtFtassSydpdpgspvsysWdFGD..gg ++++ + t+ +s + +d ++++sy+W +++g KIAA1837 254 LPVD-------------STTLDGSK-SSDD-QKIISYLWEKTQgpDG 285 stgltstepnvtHtYskgsVtpGtYtVtLtvsNgvgsasattttvtV<-* + + +++ +t+t ++ GtY tLtv+++ ++ s+++++v V KIAA1837 286 VQLENANSSVATVTGLQ----VGTYVFTLTVKDERNLQSQSSVNVIV 328 PF00801.10.ls: domain 3 of 3, from 340 to 425: score 14.4, E = 0.042 *->vsasaveegpsvvalgetVtFtassSydpdpgspvsysWdFGDggst ++++ + t+++ +s S+d+ g +vsy+W+ + KIAA1837 340 ITGN-----VVITLPTSTAELDGSKSSDDK-G-IVSYLWTRDE---- 375 gltstepnvtHtYskg........sVt.pGtYtVtLtvsNgvgsasattt g+ + +H +++++ s +GtYt L+v++++g + + +t KIAA1837 376 GSPAAGEVLNH----SdhhpilflSNLvEGTYTFHLKVTDAKGESDTDRT 421 tvtV<-* tv+V KIAA1837 422 TVEV 425 //